Variant report

Variant	rs189012
Chromosome Location	chr14:81267904-81267905
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1197475	1.00[AMR][1000 genomes]
rs162175	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs162176	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1674557	1.00[AMR][1000 genomes]
rs228117	1.00[AMR][1000 genomes]
rs228123	1.00[AMR][1000 genomes]
rs2556602	1.00[AMR][1000 genomes]
rs327430	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs327438	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs327444	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs327445	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs327448	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs327449	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs327453	0.86[AFR][1000 genomes]
rs327455	1.00[AMR][1000 genomes]
rs327461	1.00[AMR][1000 genomes]
rs327466	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs327474	1.00[AMR][1000 genomes]
rs327475	1.00[AMR][1000 genomes]
rs327478	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs327479	1.00[AMR][1000 genomes]
rs327480	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs328253	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs442359	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60529658	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6574590	1.00[AMR][1000 genomes]
rs7141981	1.00[AMR][1000 genomes]
rs7149056	1.00[AMR][1000 genomes]
rs8005704	1.00[AMR][1000 genomes]
rs8022471	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:81246800-81271600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr14:81250200-81268400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr14:81251800-81282600	Weak transcription	A549	lung
5	chr14:81252200-81268200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr14:81256400-81271000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr14:81259400-81274000	Weak transcription	Aorta	Aorta
8	chr14:81259400-81274000	Weak transcription	Pancreas	Pancrea
9	chr14:81259400-81274200	Weak transcription	Thymus	Thymus
10	chr14:81259400-81278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:81264800-81269400	Weak transcription	Fetal Lung	lung
12	chr14:81265600-81268000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:81265600-81277200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr14:81265600-81284400	Weak transcription	Fetal Thymus	thymus
15	chr14:81265800-81274600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:81266800-81268400	Weak transcription	Primary T cells from cord blood	blood
17	chr14:81267400-81269000	Weak transcription	Dnd41	blood
18	chr14:81267400-81273800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr14:81267400-81284200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr14:81267400-81284800	Weak transcription	HSMM	muscle

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