Variant report

Variant	rs6574590
Chromosome Location	chr14:81081474-81081475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10148845	0.88[YRI][hapmap]
rs1530767	0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs162175	1.00[AMR][1000 genomes]
rs162176	1.00[AMR][1000 genomes]
rs189012	1.00[AMR][1000 genomes]
rs2122427	1.00[AMR][1000 genomes]
rs2218781	1.00[AMR][1000 genomes]
rs327430	1.00[AMR][1000 genomes]
rs327438	1.00[AMR][1000 genomes]
rs327444	1.00[AMR][1000 genomes]
rs327445	1.00[AMR][1000 genomes]
rs327448	1.00[AMR][1000 genomes]
rs327449	1.00[AMR][1000 genomes]
rs327455	1.00[AMR][1000 genomes]
rs327461	1.00[AMR][1000 genomes]
rs327466	1.00[AMR][1000 genomes]
rs327474	1.00[AMR][1000 genomes]
rs327475	1.00[AMR][1000 genomes]
rs327478	1.00[AMR][1000 genomes]
rs327479	1.00[AMR][1000 genomes]
rs327480	1.00[AMR][1000 genomes]
rs328253	1.00[AMR][1000 genomes]
rs442359	1.00[AMR][1000 genomes]
rs4899775	1.00[AMR][1000 genomes]
rs60529658	1.00[AMR][1000 genomes]
rs6574587	0.88[YRI][hapmap]
rs8018892	0.88[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv902116	chr14:81018237-81082400	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81062200-81082200	Weak transcription	Dnd41	blood
2	chr14:81076200-81086600	Weak transcription	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links