Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1413755	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2095961	0.85[CHB][hapmap]
rs2183967	0.83[CEU][hapmap]
rs3777434	0.82[CEU][hapmap]
rs3777435	0.82[CEU][hapmap]
rs3777436	0.82[CEU][hapmap]
rs4895894	0.86[EUR][1000 genomes]
rs4897468	0.86[CEU][hapmap]
rs6569707	0.83[CEU][hapmap]
rs6906478	0.85[CHB][hapmap]
rs6918160	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6922177	0.85[CHB][hapmap]
rs6938552	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6941639	0.86[EUR][1000 genomes]
rs7760965	0.82[CEU][hapmap]
rs7761311	0.85[CHB][hapmap]
rs7775013	0.82[CEU][hapmap]
rs9321263	0.85[CHB][hapmap]
rs9372985	0.85[CHB][hapmap]
rs9388861	0.83[CEU][hapmap]
rs9388863	0.83[CEU][hapmap]
rs9402292	0.82[CEU][hapmap]
rs942	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131132000-131159200	Weak transcription	HSMM	muscle
2	chr6:131132000-131173800	Weak transcription	HSMMtube	muscle
3	chr6:131136400-131174400	Weak transcription	Left Ventricle	heart
4	chr6:131147600-131157800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:131148000-131157000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:131148600-131151400	Active TSS	Fetal Intestine Small	intestine
7	chr6:131148800-131158000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:131149000-131172600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:131149200-131151200	Enhancers	Fetal Stomach	stomach
10	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
11	chr6:131149600-131152400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:131149600-131160400	Weak transcription	Fetal Brain Male	brain
13	chr6:131149800-131151800	Flanking Active TSS	Liver	Liver
14	chr6:131150000-131151600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:131150000-131154800	Weak transcription	Aorta	Aorta
16	chr6:131150400-131161400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:131150600-131151200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:131150600-131151600	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
19	chr6:131150600-131151600	Transcr. at gene 5' and 3'	HepG2	liver
20	chr6:131150600-131183400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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