Variant report

Variant	rs6569707
Chromosome Location	chr6:131179801-131179802
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr6:131179744-131180465	HepG2	liver:	n/a	n/a
2	MYBL2	chr6:131179185-131180313	HepG2	liver:	n/a	n/a
3	KAP1	chr6:131178831-131180442	HEK293	kidney:	n/a	n/a
4	TEAD4	chr6:131179682-131180453	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
EPB41L2	TF binding region

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11754472	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12193574	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs13437326	0.89[CEU][hapmap]
rs17180687	0.88[CEU][hapmap]
rs17770255	0.96[CEU][hapmap]
rs17784418	0.88[CEU][hapmap]
rs17785507	0.89[CEU][hapmap]
rs2005012	0.91[ASN][1000 genomes]
rs2068147	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs2183967	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28482889	0.88[CEU][hapmap]
rs3777434	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777435	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3777436	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3777440	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs3777441	0.91[JPT][hapmap]
rs3777442	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs3777455	0.91[JPT][hapmap]
rs3777458	0.86[JPT][hapmap]
rs3777461	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs3777466	0.81[CHB][hapmap]
rs3798249	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs3798250	0.91[JPT][hapmap]
rs3822863	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs4075264	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4895901	0.88[CEU][hapmap]
rs4895903	0.90[CEU][hapmap]
rs4895907	0.89[CEU][hapmap]
rs4895908	0.89[CEU][hapmap]
rs4897468	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4897469	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4897471	0.81[JPT][hapmap]
rs4897472	0.83[JPT][hapmap]
rs4897473	0.96[CEU][hapmap]
rs4897484	0.88[CEU][hapmap]
rs4897485	0.87[CEU][hapmap]
rs59946987	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6569708	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6569710	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6900737	0.82[YRI][hapmap]
rs6906478	0.88[CEU][hapmap]
rs6919007	0.96[CEU][hapmap];0.96[CHB][hapmap];0.92[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6928920	0.83[CEU][hapmap]
rs6931804	0.93[CEU][hapmap]
rs6935108	0.91[CEU][hapmap]
rs6936553	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7739379	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7756353	0.82[YRI][hapmap]
rs7760965	0.96[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7761415	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7770860	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7775013	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs872576	0.96[CEU][hapmap]
rs872577	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs933063	0.91[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs9385564	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9388861	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9388863	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9402292	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9402299	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs942	0.86[CEU][hapmap]
rs9492755	0.87[JPT][hapmap]
rs954211	0.88[CEU][hapmap]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
2	chr6:131150600-131183400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:131151600-131216600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:131158200-131190600	Weak transcription	Spleen	Spleen
5	chr6:131158200-131214400	Weak transcription	Lung	lung
6	chr6:131159000-131229000	Weak transcription	Colonic Mucosa	Colon
7	chr6:131161000-131186600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:131161800-131186400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:131168400-131190600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:131168800-131214600	Weak transcription	Fetal Kidney	kidney
11	chr6:131170000-131189000	Strong transcription	Adipose Nuclei	Adipose
12	chr6:131170400-131181200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:131170400-131193000	Weak transcription	Fetal Thymus	thymus
14	chr6:131170400-131217400	Weak transcription	Psoas Muscle	Psoas
15	chr6:131170600-131184600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr6:131170600-131187000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr6:131170600-131190400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:131170600-131192600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:131170600-131193000	Weak transcription	Primary T cells from cord blood	blood
20	chr6:131170600-131213800	Weak transcription	GM12878-XiMat	blood
21	chr6:131170800-131189000	Strong transcription	Fetal Muscle Trunk	muscle
22	chr6:131171200-131209600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr6:131171200-131223200	Weak transcription	Right Ventricle	heart
24	chr6:131171400-131220200	Weak transcription	Fetal Brain Male	brain
25	chr6:131172600-131185600	Weak transcription	Gastric	stomach
26	chr6:131172600-131186600	Weak transcription	Brain Angular Gyrus	brain
27	chr6:131172800-131183400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr6:131172800-131189400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:131173000-131207000	Weak transcription	Brain Substantia Nigra	brain
30	chr6:131173200-131185200	Weak transcription	Thymus	Thymus
31	chr6:131173400-131190800	Weak transcription	Esophagus	oesophagus
32	chr6:131174400-131185600	Weak transcription	Primary B cells from cord blood	blood
33	chr6:131175000-131182000	Weak transcription	Placenta	Placenta
34	chr6:131175000-131185400	Weak transcription	Aorta	Aorta
35	chr6:131175000-131222400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:131175200-131180400	Strong transcription	Fetal Muscle Leg	muscle
37	chr6:131175200-131181200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:131175200-131181800	Weak transcription	Ovary	ovary
39	chr6:131175200-131190600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:131175200-131190600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:131175200-131214000	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:131175400-131183600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr6:131175400-131185400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:131175400-131188000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:131175400-131194200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:131175400-131203600	Weak transcription	A549	lung
47	chr6:131175400-131211200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:131175600-131183400	Weak transcription	Osteobl	bone
49	chr6:131175600-131185600	Weak transcription	HSMMtube	muscle
50	chr6:131175600-131188200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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