Variant report

Variant	rs7756353
Chromosome Location	chr6:131157274-131157275
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP3-324N14.2.1-1	chr6:131156010-131158273	ENSG00000256162

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11966199	0.86[YRI][hapmap];0.96[AFR][1000 genomes]
rs2183967	0.88[YRI][hapmap]
rs3777434	0.87[YRI][hapmap]
rs3777436	0.87[YRI][hapmap]
rs59946656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6569707	0.82[YRI][hapmap]
rs6569708	0.81[YRI][hapmap]
rs6900737	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6920331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6920685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6921221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6921339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7775013	0.87[YRI][hapmap]
rs9388863	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131132000-131159200	Weak transcription	HSMM	muscle
2	chr6:131132000-131173800	Weak transcription	HSMMtube	muscle
3	chr6:131136400-131174400	Weak transcription	Left Ventricle	heart
4	chr6:131147600-131157800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:131148800-131158000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:131149000-131172600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
8	chr6:131149600-131160400	Weak transcription	Fetal Brain Male	brain
9	chr6:131150400-131161400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:131150600-131183400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:131151600-131157600	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:131151600-131158200	Genic enhancers	HepG2	liver
13	chr6:131151600-131216600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:131152400-131159400	Weak transcription	Adipose Nuclei	Adipose
15	chr6:131152400-131161800	Strong transcription	Fetal Intestine Large	intestine
16	chr6:131152800-131168000	Weak transcription	Fetal Kidney	kidney
17	chr6:131153400-131159600	Weak transcription	Fetal Stomach	stomach
18	chr6:131153600-131162400	Weak transcription	Fetal Lung	lung
19	chr6:131154000-131173800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:131154600-131160800	Weak transcription	Fetal Intestine Small	intestine
21	chr6:131155000-131160200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:131155000-131174600	Weak transcription	Aorta	Aorta
23	chr6:131156000-131158200	Enhancers	Brain Hippocampus Middle	brain
24	chr6:131156200-131159800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:131156200-131161000	Genic enhancers	Liver	Liver
26	chr6:131156600-131157600	Enhancers	Brain Cingulate Gyrus	brain
27	chr6:131156600-131158200	Enhancers	Brain Angular Gyrus	brain
28	chr6:131156600-131158200	Enhancers	Brain Substantia Nigra	brain
29	chr6:131156600-131158600	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr6:131157000-131157400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr6:131157200-131157800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:131157200-131158000	Enhancers	Colon Smooth Muscle	Colon
33	chr6:131157200-131159600	Weak transcription	NHLF	lung

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