Variant report

Variant	rs933063
Chromosome Location	chr6:131183715-131183716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1043596	0.88[CEU][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs11754472	0.88[ASN][1000 genomes]
rs12193574	0.90[JPT][hapmap]
rs12194612	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs12526896	0.86[JPT][hapmap]
rs12530288	0.86[JPT][hapmap]
rs1811949	0.84[CEU][hapmap]
rs2005012	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2068147	0.91[JPT][hapmap]
rs2095961	0.88[CEU][hapmap]
rs2183967	0.91[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs2297853	0.84[CEU][hapmap]
rs3777434	0.91[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs3777435	0.91[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs3777436	0.91[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs3777440	0.91[JPT][hapmap]
rs3777441	0.81[JPT][hapmap]
rs3777455	0.82[JPT][hapmap]
rs3777458	0.87[JPT][hapmap];0.86[LWK][hapmap];0.80[MKK][hapmap]
rs3777461	0.91[JPT][hapmap]
rs3777466	0.86[JPT][hapmap]
rs3798249	0.83[JPT][hapmap]
rs3798250	0.82[JPT][hapmap]
rs3822863	0.82[JPT][hapmap]
rs4075264	0.88[ASN][1000 genomes]
rs4357159	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs4897468	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs4897469	0.88[ASN][1000 genomes]
rs4897471	0.90[JPT][hapmap]
rs4897472	0.91[JPT][hapmap]
rs59946987	0.88[ASN][1000 genomes]
rs6569707	0.91[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs6569708	0.91[CHB][hapmap];0.80[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs6569710	0.88[ASN][1000 genomes]
rs6919007	0.87[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs6921396	0.84[CEU][hapmap]
rs6922045	0.83[CEU][hapmap]
rs6922177	0.88[CEU][hapmap]
rs6936553	0.86[ASN][1000 genomes]
rs6941712	0.86[JPT][hapmap]
rs7739379	0.88[ASN][1000 genomes]
rs7741148	0.83[CEU][hapmap]
rs7760965	0.86[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs7761415	0.87[ASN][1000 genomes]
rs7769678	0.84[CEU][hapmap]
rs7770860	0.89[ASN][1000 genomes]
rs7775013	0.91[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs867707	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs872577	0.92[ASN][1000 genomes]
rs915172	0.88[CEU][hapmap];0.81[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9321260	0.95[JPT][hapmap]
rs9321263	0.88[CEU][hapmap]
rs9372985	0.88[CEU][hapmap]
rs9385564	0.86[ASN][1000 genomes]
rs9388861	0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs9388863	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs9402292	0.95[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs9402299	0.82[JPT][hapmap]
rs9492755	0.82[CHB][hapmap];0.87[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs933063	EPB41L2	cis	parietal	SCAN
rs933063	EPB41L2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
2	chr6:131151600-131216600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:131158200-131190600	Weak transcription	Spleen	Spleen
4	chr6:131158200-131214400	Weak transcription	Lung	lung
5	chr6:131159000-131229000	Weak transcription	Colonic Mucosa	Colon
6	chr6:131161000-131186600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:131161800-131186400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:131168400-131190600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:131168800-131214600	Weak transcription	Fetal Kidney	kidney
10	chr6:131170000-131189000	Strong transcription	Adipose Nuclei	Adipose
11	chr6:131170400-131193000	Weak transcription	Fetal Thymus	thymus
12	chr6:131170400-131217400	Weak transcription	Psoas Muscle	Psoas
13	chr6:131170600-131184600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:131170600-131187000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr6:131170600-131190400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:131170600-131192600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:131170600-131193000	Weak transcription	Primary T cells from cord blood	blood
18	chr6:131170600-131213800	Weak transcription	GM12878-XiMat	blood
19	chr6:131170800-131189000	Strong transcription	Fetal Muscle Trunk	muscle
20	chr6:131171200-131209600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:131171200-131223200	Weak transcription	Right Ventricle	heart
22	chr6:131171400-131220200	Weak transcription	Fetal Brain Male	brain
23	chr6:131172600-131185600	Weak transcription	Gastric	stomach
24	chr6:131172600-131186600	Weak transcription	Brain Angular Gyrus	brain
25	chr6:131172800-131189400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr6:131173000-131207000	Weak transcription	Brain Substantia Nigra	brain
27	chr6:131173200-131185200	Weak transcription	Thymus	Thymus
28	chr6:131173400-131190800	Weak transcription	Esophagus	oesophagus
29	chr6:131174400-131185600	Weak transcription	Primary B cells from cord blood	blood
30	chr6:131175000-131185400	Weak transcription	Aorta	Aorta
31	chr6:131175000-131222400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr6:131175200-131190600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:131175200-131190600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:131175200-131214000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr6:131175400-131185400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:131175400-131188000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:131175400-131194200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:131175400-131203600	Weak transcription	A549	lung
39	chr6:131175400-131211200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:131175600-131185600	Weak transcription	HSMMtube	muscle
41	chr6:131175600-131188200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:131175600-131190400	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:131175600-131190600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:131175600-131205400	Weak transcription	NH-A	brain
45	chr6:131175600-131221600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr6:131175800-131184400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr6:131176200-131184400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:131176200-131190800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr6:131176800-131188400	Strong transcription	Fetal Lung	lung
50	chr6:131177200-131209200	Weak transcription	HUVEC	blood vessel

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