Variant report

Variant	rs4357159
Chromosome Location	chr6:131241971-131241972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs12110524	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12193574	0.90[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs12206057	0.83[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12526896	0.88[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs12530288	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs12664445	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2068147	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs2183967	0.82[JPT][hapmap]
rs2275509	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3777434	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs3777435	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs3777436	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs3777438	0.83[CEU][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3777440	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs3777441	0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs3777442	0.91[CHB][hapmap];0.80[JPT][hapmap];0.88[ASN][1000 genomes]
rs3777454	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3777455	0.95[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs3777457	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3777458	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777461	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs3777462	0.92[ASN][1000 genomes]
rs3777465	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3777466	0.90[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs3798249	0.94[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs3798250	0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs3822861	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3822863	0.95[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs4323333	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4897468	0.91[JPT][hapmap]
rs4897471	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4897472	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4897474	0.93[ASN][1000 genomes]
rs6569708	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs6569713	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6569715	0.93[ASN][1000 genomes]
rs6919007	0.87[JPT][hapmap]
rs6938586	0.83[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6939358	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6941712	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7747517	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7760965	0.87[JPT][hapmap]
rs7763584	0.86[ASN][1000 genomes]
rs7773290	0.93[ASN][1000 genomes]
rs7775013	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs9321257	0.93[ASN][1000 genomes]
rs9321260	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs933063	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs9375779	0.93[ASN][1000 genomes]
rs9375781	0.93[ASN][1000 genomes]
rs9375782	0.91[ASN][1000 genomes]
rs9375783	0.88[ASN][1000 genomes]
rs9388861	0.91[JPT][hapmap]
rs9388863	0.91[JPT][hapmap]
rs9388864	0.86[ASN][1000 genomes]
rs9388869	0.91[ASN][1000 genomes]
rs9402292	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs9402299	0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs9483185	0.91[ASN][1000 genomes]
rs9483192	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9483201	0.83[ASN][1000 genomes]
rs9492755	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9492756	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131222200-131248400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:131222200-131251800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:131222400-131248600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:131228800-131245800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:131229400-131245200	Weak transcription	Adipose Nuclei	Adipose
7	chr6:131229600-131245400	Weak transcription	NHLF	lung
8	chr6:131229600-131248600	Weak transcription	Stomach Mucosa	stomach
9	chr6:131229600-131249600	Weak transcription	Osteobl	bone
10	chr6:131229800-131242400	Weak transcription	HepG2	liver
11	chr6:131234000-131250200	Weak transcription	Ovary	ovary
12	chr6:131234000-131250600	Weak transcription	Fetal Stomach	stomach
13	chr6:131234600-131244200	Weak transcription	Brain Substantia Nigra	brain
14	chr6:131234600-131244200	Weak transcription	Small Intestine	intestine
15	chr6:131234600-131244600	Weak transcription	Left Ventricle	heart
16	chr6:131234600-131248600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:131234600-131249400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:131234600-131250200	Weak transcription	Pancreas	Pancrea
19	chr6:131234800-131244400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:131234800-131245000	Weak transcription	HSMM	muscle
21	chr6:131234800-131246800	Weak transcription	Primary B cells from peripheral blood	blood
22	chr6:131234800-131247200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr6:131234800-131254000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
25	chr6:131235800-131244200	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:131236400-131254000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:131238000-131244800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:131238400-131242200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:131238400-131248800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:131238400-131249800	Weak transcription	Colon Smooth Muscle	Colon
31	chr6:131238400-131250200	Weak transcription	Aorta	Aorta
32	chr6:131239200-131252600	Weak transcription	Dnd41	blood
33	chr6:131239800-131244200	Weak transcription	Fetal Lung	lung
34	chr6:131240000-131253600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:131241000-131242000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr6:131241400-131242000	Strong transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links