Variant report

Variant	rs9375779
Chromosome Location	chr6:131244480-131244481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12193574	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12526896	0.83[ASN][1000 genomes]
rs12530288	0.81[ASN][1000 genomes]
rs12664445	0.89[ASN][1000 genomes]
rs2068147	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2275509	0.94[ASN][1000 genomes]
rs3777440	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3777441	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777442	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3777455	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777458	0.92[ASN][1000 genomes]
rs3777461	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777462	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777465	0.90[ASN][1000 genomes]
rs3777466	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3798249	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3798250	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3822861	0.90[ASN][1000 genomes]
rs3822863	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4323333	0.96[ASN][1000 genomes]
rs4357159	0.93[ASN][1000 genomes]
rs4897471	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4897474	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6569715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941712	0.83[ASN][1000 genomes]
rs7763584	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7773290	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9321257	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321260	0.89[ASN][1000 genomes]
rs9375781	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375782	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9375783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9388864	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9388869	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9402299	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9483185	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9483192	1.00[ASN][1000 genomes]
rs9483201	0.80[ASN][1000 genomes]
rs9492755	0.94[ASN][1000 genomes]
rs9492756	0.92[ASN][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131222200-131248400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:131222200-131251800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:131222400-131248600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:131228800-131245800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:131229400-131245200	Weak transcription	Adipose Nuclei	Adipose
7	chr6:131229600-131245400	Weak transcription	NHLF	lung
8	chr6:131229600-131248600	Weak transcription	Stomach Mucosa	stomach
9	chr6:131229600-131249600	Weak transcription	Osteobl	bone
10	chr6:131234000-131250200	Weak transcription	Ovary	ovary
11	chr6:131234000-131250600	Weak transcription	Fetal Stomach	stomach
12	chr6:131234600-131244600	Weak transcription	Left Ventricle	heart
13	chr6:131234600-131248600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:131234600-131249400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:131234600-131250200	Weak transcription	Pancreas	Pancrea
16	chr6:131234800-131245000	Weak transcription	HSMM	muscle
17	chr6:131234800-131246800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr6:131234800-131247200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:131234800-131254000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
21	chr6:131236400-131254000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:131238000-131244800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:131238400-131248800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:131238400-131249800	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:131238400-131250200	Weak transcription	Aorta	Aorta
26	chr6:131239200-131252600	Weak transcription	Dnd41	blood
27	chr6:131240000-131253600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr6:131242000-131244600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr6:131242200-131249600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:131242400-131244600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:131242400-131247600	Strong transcription	HepG2	liver
32	chr6:131242600-131254800	Weak transcription	Fetal Kidney	kidney
33	chr6:131242800-131247200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:131242800-131255000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:131243600-131244600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:131244000-131248000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:131244200-131245000	Genic enhancers	Fetal Muscle Leg	muscle
38	chr6:131244200-131245000	Enhancers	Small Intestine	intestine
39	chr6:131244200-131246200	Strong transcription	Fetal Lung	lung
40	chr6:131244200-131249400	Weak transcription	NHDF-Ad	bronchial
41	chr6:131244200-131250000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr6:131244400-131244600	Weak transcription	HSMMtube	muscle
44	chr6:131244400-131244800	Weak transcription	Brain Substantia Nigra	brain
45	chr6:131244400-131245000	Enhancers	Brain Hippocampus Middle	brain
46	chr6:131244400-131245000	Enhancers	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links