Variant report

Variant	rs9321260
Chromosome Location	chr6:131263542-131263543
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs12110524	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12193574	0.86[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs12206057	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12526896	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs12530288	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs12664445	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2068147	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs2183967	0.81[JPT][hapmap]
rs2275509	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3777434	0.81[JPT][hapmap]
rs3777435	0.91[JPT][hapmap]
rs3777436	0.91[JPT][hapmap]
rs3777438	0.84[CEU][hapmap];0.84[AMR][1000 genomes]
rs3777440	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs3777441	0.91[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs3777442	0.86[CHB][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs3777454	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3777455	0.91[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs3777457	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3777458	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777461	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs3777462	0.93[ASN][1000 genomes]
rs3777465	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3777466	0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs3798249	0.90[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs3798250	0.91[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs3822861	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3822863	0.91[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs4323333	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4357159	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4897468	0.91[JPT][hapmap]
rs4897471	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4897472	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs4897474	0.89[ASN][1000 genomes]
rs6569708	0.86[JPT][hapmap]
rs6569713	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6569715	0.89[ASN][1000 genomes]
rs6919007	0.86[JPT][hapmap]
rs6938586	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs6939358	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6941712	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs7747517	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7760965	0.86[JPT][hapmap]
rs7763584	0.83[ASN][1000 genomes]
rs7773290	0.89[ASN][1000 genomes]
rs7775013	0.91[JPT][hapmap]
rs9321257	0.89[ASN][1000 genomes]
rs933063	0.95[JPT][hapmap]
rs9375779	0.89[ASN][1000 genomes]
rs9375781	0.89[ASN][1000 genomes]
rs9375782	0.90[ASN][1000 genomes]
rs9375783	0.89[ASN][1000 genomes]
rs9388861	0.91[JPT][hapmap]
rs9388863	0.91[JPT][hapmap]
rs9388864	0.83[ASN][1000 genomes]
rs9388869	0.91[ASN][1000 genomes]
rs9402292	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs9402299	0.91[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs9483185	0.88[ASN][1000 genomes]
rs9483192	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9483201	0.84[ASN][1000 genomes]
rs9492755	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9492756	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
3	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:131246200-131264800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:131251200-131268200	Weak transcription	Right Atrium	heart
6	chr6:131253000-131272800	Weak transcription	Dnd41	blood
7	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
8	chr6:131255000-131274600	Weak transcription	Fetal Stomach	stomach
9	chr6:131255200-131264600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:131255200-131265000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:131255200-131265800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:131255200-131276000	Weak transcription	Left Ventricle	heart
13	chr6:131255400-131264600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:131255400-131276200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:131255400-131288800	Weak transcription	Fetal Kidney	kidney
16	chr6:131255800-131264400	Weak transcription	Fetal Intestine Small	intestine
17	chr6:131255800-131265800	Weak transcription	Pancreas	Pancrea
18	chr6:131255800-131276200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:131255800-131277400	Weak transcription	Psoas Muscle	Psoas
20	chr6:131256000-131279400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:131256600-131265200	Weak transcription	Aorta	Aorta
22	chr6:131257200-131264600	Weak transcription	Fetal Intestine Large	intestine
23	chr6:131257200-131270200	Weak transcription	Fetal Muscle Leg	muscle
24	chr6:131257400-131264800	Weak transcription	Adipose Nuclei	Adipose
25	chr6:131257400-131281800	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:131258200-131265600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:131258400-131264800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:131258400-131264800	Weak transcription	Fetal Lung	lung
29	chr6:131258400-131265000	Weak transcription	Ovary	ovary
30	chr6:131258400-131265600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr6:131258400-131265600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:131258400-131265600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:131258400-131265800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr6:131259600-131264600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:131259800-131264600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:131259800-131264600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:131259800-131264800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:131259800-131264800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr6:131259800-131265000	Weak transcription	NHLF	lung
40	chr6:131259800-131265600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:131259800-131265800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr6:131259800-131268200	Weak transcription	HSMM	muscle
43	chr6:131260000-131264200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:131260000-131264600	Weak transcription	Brain Anterior Caudate	brain
45	chr6:131260000-131264600	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:131260000-131264600	Weak transcription	Brain Substantia Nigra	brain
47	chr6:131260000-131265000	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:131260000-131265600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:131260000-131265800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:131260000-131265800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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