Variant report

Variant	rs9483201
Chromosome Location	chr6:131304860-131304861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131303458..131306255-chr6:131349749..131352593,2	K562	blood:
2	chr6:131304583..131308500-chr6:131310186..131313138,4	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12193574	0.80[ASN][1000 genomes]
rs12526896	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12530288	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12664445	0.81[ASN][1000 genomes]
rs2068147	0.80[ASN][1000 genomes]
rs2275509	0.82[ASN][1000 genomes]
rs3777455	0.80[ASN][1000 genomes]
rs3777458	0.84[ASN][1000 genomes]
rs3777461	0.83[ASN][1000 genomes]
rs3777462	0.83[ASN][1000 genomes]
rs3777465	0.88[ASN][1000 genomes]
rs3777466	0.88[ASN][1000 genomes]
rs3822861	0.81[ASN][1000 genomes]
rs3822863	0.80[ASN][1000 genomes]
rs4357159	0.83[ASN][1000 genomes]
rs4895910	0.81[ASN][1000 genomes]
rs4897471	0.80[ASN][1000 genomes]
rs4897474	0.80[ASN][1000 genomes]
rs6569715	0.80[ASN][1000 genomes]
rs6941712	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7773290	0.80[ASN][1000 genomes]
rs9321257	0.80[ASN][1000 genomes]
rs9321260	0.84[ASN][1000 genomes]
rs9321265	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9375779	0.80[ASN][1000 genomes]
rs9375781	0.80[ASN][1000 genomes]
rs9375782	0.81[ASN][1000 genomes]
rs9375783	0.80[ASN][1000 genomes]
rs9388869	0.82[ASN][1000 genomes]
rs9483192	0.80[ASN][1000 genomes]
rs9492755	0.82[ASN][1000 genomes]
rs9492756	0.80[ASN][1000 genomes]
rs9492773	0.86[AFR][1000 genomes]
rs9492775	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131288200-131306600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:131291800-131306200	Weak transcription	Fetal Intestine Small	intestine
3	chr6:131292400-131306400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:131298800-131314800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:131299000-131306200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:131299000-131309800	Weak transcription	HepG2	liver
7	chr6:131300400-131312200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:131300400-131314600	Weak transcription	Small Intestine	intestine
9	chr6:131301000-131305000	Enhancers	Dnd41	blood
10	chr6:131301800-131305000	Enhancers	Colon Smooth Muscle	Colon
11	chr6:131301800-131306200	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:131302400-131306400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:131302800-131305800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:131302800-131306200	Weak transcription	Thymus	Thymus
15	chr6:131302800-131306200	Weak transcription	NHLF	lung
16	chr6:131303000-131305400	Weak transcription	Brain Substantia Nigra	brain
17	chr6:131303800-131315400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:131304000-131305800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:131304000-131312600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:131304200-131313400	Weak transcription	K562	blood
21	chr6:131304400-131306400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:131304400-131312200	Weak transcription	Fetal Stomach	stomach
23	chr6:131304600-131305800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:131304800-131305600	Weak transcription	GM12878-XiMat	blood

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