Variant report

Variant	rs9375783
Chromosome Location	chr6:131258745-131258746
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131252764..131256680-chr6:131257995..131261585,5	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12193574	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12526896	0.83[ASN][1000 genomes]
rs12530288	0.81[ASN][1000 genomes]
rs12664445	0.89[ASN][1000 genomes]
rs2068147	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2275509	0.90[ASN][1000 genomes]
rs3777440	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3777441	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3777442	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3777455	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3777458	0.92[ASN][1000 genomes]
rs3777461	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777462	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777465	0.90[ASN][1000 genomes]
rs3777466	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3798249	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3798250	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3822861	0.86[ASN][1000 genomes]
rs3822863	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4323333	0.92[ASN][1000 genomes]
rs4357159	0.88[ASN][1000 genomes]
rs4897471	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4897474	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6569715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6941712	0.83[ASN][1000 genomes]
rs7763584	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7773290	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9321257	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9321260	0.89[ASN][1000 genomes]
rs9375779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9375781	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9375782	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9388864	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9388869	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9402299	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9483185	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9483192	0.96[ASN][1000 genomes]
rs9483201	0.80[ASN][1000 genomes]
rs9492755	0.90[ASN][1000 genomes]
rs9492756	0.88[ASN][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
3	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:131246200-131264800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:131249000-131259000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:131251200-131268200	Weak transcription	Right Atrium	heart
7	chr6:131253000-131272800	Weak transcription	Dnd41	blood
8	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
9	chr6:131255000-131274600	Weak transcription	Fetal Stomach	stomach
10	chr6:131255200-131262600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:131255200-131264600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:131255200-131265000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:131255200-131265800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:131255200-131276000	Weak transcription	Left Ventricle	heart
15	chr6:131255400-131259200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:131255400-131259200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:131255400-131259200	Enhancers	HepG2	liver
18	chr6:131255400-131259200	Weak transcription	HMEC	breast
19	chr6:131255400-131259200	Weak transcription	NH-A	brain
20	chr6:131255400-131259600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:131255400-131264600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:131255400-131276200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:131255400-131288800	Weak transcription	Fetal Kidney	kidney
24	chr6:131255800-131259200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:131255800-131264400	Weak transcription	Fetal Intestine Small	intestine
26	chr6:131255800-131265800	Weak transcription	Pancreas	Pancrea
27	chr6:131255800-131276200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:131255800-131277400	Weak transcription	Psoas Muscle	Psoas
29	chr6:131256000-131258800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:131256000-131263000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr6:131256000-131279400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:131256400-131259000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr6:131256600-131259200	Weak transcription	Brain Anterior Caudate	brain
34	chr6:131256600-131265200	Weak transcription	Aorta	Aorta
35	chr6:131257000-131259000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:131257000-131259000	Weak transcription	Brain Hippocampus Middle	brain
37	chr6:131257000-131259200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:131257200-131258800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:131257200-131259200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:131257200-131264600	Weak transcription	Fetal Intestine Large	intestine
41	chr6:131257200-131270200	Weak transcription	Fetal Muscle Leg	muscle
42	chr6:131257400-131258800	Weak transcription	HSMM	muscle
43	chr6:131257400-131259000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr6:131257400-131259200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:131257400-131259200	Weak transcription	Brain Angular Gyrus	brain
46	chr6:131257400-131264800	Weak transcription	Adipose Nuclei	Adipose
47	chr6:131257400-131281800	Weak transcription	Colon Smooth Muscle	Colon
48	chr6:131257600-131259200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:131257600-131259200	Weak transcription	Osteobl	bone
50	chr6:131257600-131259400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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