Variant report

Variant	rs9321257
Chromosome Location	chr6:131250855-131250856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131250056..131252912-chr6:131253561..131255639,2	MCF-7	breast:
2	chr6:131245188..131247804-chr6:131249935..131252148,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12193574	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12526896	0.83[ASN][1000 genomes]
rs12530288	0.81[ASN][1000 genomes]
rs12664445	0.89[ASN][1000 genomes]
rs2068147	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2275509	0.94[ASN][1000 genomes]
rs3777440	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3777441	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777442	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3777455	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777458	0.92[ASN][1000 genomes]
rs3777461	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777462	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777465	0.90[ASN][1000 genomes]
rs3777466	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3798249	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3798250	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3822861	0.90[ASN][1000 genomes]
rs3822863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4323333	0.96[ASN][1000 genomes]
rs4357159	0.93[ASN][1000 genomes]
rs4897471	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4897474	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6569715	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941712	0.83[ASN][1000 genomes]
rs7763584	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7773290	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9321260	0.89[ASN][1000 genomes]
rs9375779	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375782	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9375783	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9388864	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9388869	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9402299	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9483185	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9483192	1.00[ASN][1000 genomes]
rs9483201	0.80[ASN][1000 genomes]
rs9492755	0.94[ASN][1000 genomes]
rs9492756	0.92[ASN][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131222200-131251800	Weak transcription	Primary B cells from cord blood	blood
3	chr6:131234800-131254000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
5	chr6:131236400-131254000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:131239200-131252600	Weak transcription	Dnd41	blood
7	chr6:131240000-131253600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:131242600-131254800	Weak transcription	Fetal Kidney	kidney
9	chr6:131242800-131255000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:131244800-131255000	Weak transcription	Lung	lung
12	chr6:131245000-131254000	Weak transcription	Left Ventricle	heart
13	chr6:131245000-131254800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:131245400-131253600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:131246200-131252200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:131246200-131254200	Weak transcription	Fetal Intestine Large	intestine
17	chr6:131246200-131264800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:131246600-131254800	Weak transcription	Placenta	Placenta
19	chr6:131246800-131251200	Enhancers	Brain Angular Gyrus	brain
20	chr6:131247800-131254200	Weak transcription	Fetal Intestine Small	intestine
21	chr6:131248600-131251200	Enhancers	Brain Cingulate Gyrus	brain
22	chr6:131248800-131253800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:131248800-131254200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:131248800-131255000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr6:131249000-131251200	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr6:131249000-131252600	Weak transcription	HepG2	liver
27	chr6:131249000-131254200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:131249000-131254800	Weak transcription	HMEC	breast
29	chr6:131249000-131259000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:131249200-131251000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr6:131249200-131253600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:131249200-131253800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr6:131249200-131254000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:131249200-131255000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:131249400-131251200	Enhancers	Psoas Muscle	Psoas
36	chr6:131249400-131251200	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr6:131249600-131251200	Enhancers	Brain Substantia Nigra	brain
38	chr6:131249800-131251200	Enhancers	Colon Smooth Muscle	Colon
39	chr6:131249800-131251200	Enhancers	Fetal Muscle Leg	muscle
40	chr6:131249800-131255000	Weak transcription	Small Intestine	intestine
41	chr6:131250000-131251000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
42	chr6:131250000-131251000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr6:131250000-131251000	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr6:131250000-131251000	Flanking Active TSS	Osteobl	bone
45	chr6:131250000-131251200	Enhancers	HSMM	muscle
46	chr6:131250000-131251400	Enhancers	Brain Anterior Caudate	brain
47	chr6:131250000-131251400	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr6:131250200-131251200	Enhancers	Aorta	Aorta
49	chr6:131250200-131253000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr6:131250400-131251400	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links