Variant report

Variant	rs9375782
Chromosome Location	chr6:131255621-131255622
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:131252764..131256680-chr6:131257995..131261585,5	K562	blood:
2	chr6:131251571..131254129-chr6:131255029..131257491,2	K562	blood:
3	chr6:131250056..131252912-chr6:131253561..131255639,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12193574	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12526896	0.84[ASN][1000 genomes]
rs12530288	0.83[ASN][1000 genomes]
rs12664445	0.91[ASN][1000 genomes]
rs2068147	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2275509	0.93[ASN][1000 genomes]
rs3777440	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3777441	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3777442	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3777455	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3777458	0.93[ASN][1000 genomes]
rs3777461	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777462	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777465	0.92[ASN][1000 genomes]
rs3777466	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3798249	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3798250	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3822861	0.89[ASN][1000 genomes]
rs3822863	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4323333	0.94[ASN][1000 genomes]
rs4357159	0.91[ASN][1000 genomes]
rs4897471	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4897474	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6569715	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6941712	0.85[ASN][1000 genomes]
rs7763584	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7773290	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9321257	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9321260	0.90[ASN][1000 genomes]
rs9375779	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9375781	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9375783	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9388864	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9388869	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9402299	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9483185	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9483192	0.99[ASN][1000 genomes]
rs9483201	0.81[ASN][1000 genomes]
rs9492755	0.93[ASN][1000 genomes]
rs9492756	0.91[ASN][1000 genomes]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
3	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:131246200-131264800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:131249000-131259000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:131251200-131268200	Weak transcription	Right Atrium	heart
7	chr6:131251800-131256200	Weak transcription	Aorta	Aorta
8	chr6:131253000-131272800	Weak transcription	Dnd41	blood
9	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
10	chr6:131253400-131256200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:131253600-131257000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:131253600-131257400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:131253600-131257400	Enhancers	Adipose Nuclei	Adipose
14	chr6:131253800-131255800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:131253800-131255800	Enhancers	Psoas Muscle	Psoas
16	chr6:131253800-131256000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:131253800-131256600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:131253800-131256600	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr6:131253800-131257200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:131253800-131257600	Enhancers	Osteobl	bone
21	chr6:131254000-131255800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:131254000-131255800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:131254000-131257200	Enhancers	Fetal Muscle Leg	muscle
24	chr6:131254000-131258200	Enhancers	NHLF	lung
25	chr6:131254200-131255800	Enhancers	Fetal Intestine Small	intestine
26	chr6:131254200-131255800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr6:131254200-131257400	Enhancers	HSMM	muscle
28	chr6:131254200-131258200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:131254400-131257400	Enhancers	Muscle Satellite Cultured Cells	--
30	chr6:131254800-131256000	Enhancers	Fetal Muscle Trunk	muscle
31	chr6:131254800-131256000	Enhancers	Placenta	Placenta
32	chr6:131254800-131257600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:131255000-131255800	Enhancers	H1 Cell Line	embryonic stem cell
34	chr6:131255000-131255800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:131255000-131255800	Enhancers	Small Intestine	intestine
36	chr6:131255000-131255800	Flanking Active TSS	NHDF-Ad	bronchial
37	chr6:131255000-131256000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:131255000-131256000	Enhancers	Lung	lung
39	chr6:131255000-131274600	Weak transcription	Fetal Stomach	stomach
40	chr6:131255200-131256200	Weak transcription	Fetal Lung	lung
41	chr6:131255200-131256600	Enhancers	Brain Anterior Caudate	brain
42	chr6:131255200-131256800	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:131255200-131257000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:131255200-131257800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr6:131255200-131258000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr6:131255200-131258200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:131255200-131262600	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr6:131255200-131264600	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr6:131255200-131265000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr6:131255200-131265800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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