Variant report

Variant	rs3777465
Chromosome Location	chr6:131267228-131267229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131256677..131258531-chr6:131266868..131268391,2	K562	blood:
2	chr6:131265482..131267662-chr6:131299441..131302281,2	K562	blood:

Variant related genes	Relation type
ENSG00000079819	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12110524	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12193574	0.90[ASN][1000 genomes]
rs12526896	0.90[ASN][1000 genomes]
rs12530288	0.89[ASN][1000 genomes]
rs12664445	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1811949	0.84[AFR][1000 genomes]
rs2068147	0.90[ASN][1000 genomes]
rs2275509	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3777440	0.89[ASN][1000 genomes]
rs3777441	0.88[ASN][1000 genomes]
rs3777442	0.86[ASN][1000 genomes]
rs3777454	0.81[AMR][1000 genomes]
rs3777455	0.90[ASN][1000 genomes]
rs3777457	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3777458	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3777461	0.94[ASN][1000 genomes]
rs3777462	0.94[ASN][1000 genomes]
rs3777466	1.00[ASN][1000 genomes]
rs3798249	0.88[ASN][1000 genomes]
rs3798250	0.88[ASN][1000 genomes]
rs3822861	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3822863	0.90[ASN][1000 genomes]
rs4323333	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4357159	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4897471	0.90[ASN][1000 genomes]
rs4897474	0.90[ASN][1000 genomes]
rs6569715	0.90[ASN][1000 genomes]
rs6921396	0.82[AFR][1000 genomes]
rs6922045	0.82[AFR][1000 genomes]
rs6939358	0.83[AMR][1000 genomes]
rs6941712	0.91[ASN][1000 genomes]
rs7747517	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7763584	0.84[ASN][1000 genomes]
rs7769678	0.84[AFR][1000 genomes]
rs7771543	0.84[AFR][1000 genomes]
rs7773290	0.90[ASN][1000 genomes]
rs9321257	0.90[ASN][1000 genomes]
rs9321260	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9375779	0.90[ASN][1000 genomes]
rs9375781	0.90[ASN][1000 genomes]
rs9375782	0.92[ASN][1000 genomes]
rs9375783	0.90[ASN][1000 genomes]
rs9385568	0.84[AFR][1000 genomes]
rs9388864	0.84[ASN][1000 genomes]
rs9388869	0.92[ASN][1000 genomes]
rs9402299	0.89[ASN][1000 genomes]
rs9402303	0.82[AFR][1000 genomes]
rs9483185	0.89[ASN][1000 genomes]
rs9483192	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9483201	0.88[ASN][1000 genomes]
rs9492755	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9492756	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:131251200-131268200	Weak transcription	Right Atrium	heart
4	chr6:131253000-131272800	Weak transcription	Dnd41	blood
5	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
6	chr6:131255000-131274600	Weak transcription	Fetal Stomach	stomach
7	chr6:131255200-131276000	Weak transcription	Left Ventricle	heart
8	chr6:131255400-131276200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:131255400-131288800	Weak transcription	Fetal Kidney	kidney
10	chr6:131255800-131276200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:131255800-131277400	Weak transcription	Psoas Muscle	Psoas
12	chr6:131256000-131279400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:131257200-131270200	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:131257400-131281800	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:131259800-131268200	Weak transcription	HSMM	muscle
16	chr6:131260000-131286200	Weak transcription	HSMMtube	muscle
17	chr6:131263600-131272800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:131264400-131269200	Enhancers	HepG2	liver
19	chr6:131264600-131267400	Enhancers	Brain Hippocampus Middle	brain
20	chr6:131264600-131267600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:131264600-131267800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:131264600-131268200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:131264800-131267400	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr6:131264800-131267600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr6:131264800-131267600	Enhancers	Fetal Lung	lung
26	chr6:131264800-131277800	Weak transcription	Gastric	stomach
27	chr6:131265000-131267400	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr6:131265000-131267800	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr6:131265000-131269000	Enhancers	NHLF	lung
30	chr6:131265400-131267600	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr6:131265600-131267400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:131265600-131267600	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr6:131265600-131267600	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr6:131265600-131276000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr6:131265800-131267400	Enhancers	HMEC	breast
36	chr6:131265800-131274400	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr6:131266000-131267400	Enhancers	Brain Anterior Caudate	brain
38	chr6:131266000-131267800	Enhancers	NHDF-Ad	bronchial
39	chr6:131266000-131268200	Weak transcription	Adipose Nuclei	Adipose
40	chr6:131266000-131269400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:131266000-131272600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:131266000-131275000	Weak transcription	A549	lung
43	chr6:131266000-131280600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:131266000-131283800	Weak transcription	Lung	lung
45	chr6:131266000-131287600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr6:131266200-131267400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:131266600-131268800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:131266600-131274400	Weak transcription	Ovary	ovary
49	chr6:131266800-131268200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr6:131266800-131268200	Weak transcription	K562	blood

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