Variant report

Variant	rs7747517
Chromosome Location	chr6:131232606-131232607
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11154610	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12110524	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206057	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664445	0.81[EUR][1000 genomes]
rs2275509	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3777438	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3777454	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3777457	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777458	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3777465	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3822861	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4323333	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4357159	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6569713	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66773803	0.80[ASN][1000 genomes]
rs6938586	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6939358	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9321260	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9483192	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9492755	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9492756	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9492767	0.83[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131191000-131234400	Weak transcription	Esophagus	oesophagus
2	chr6:131191200-131233000	Weak transcription	Spleen	Spleen
3	chr6:131203600-131234200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:131209000-131234000	Weak transcription	Fetal Thymus	thymus
5	chr6:131211200-131234000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:131211400-131234200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:131215200-131234000	Weak transcription	Primary T cells from cord blood	blood
8	chr6:131215200-131234200	Weak transcription	Thymus	Thymus
9	chr6:131215400-131238200	Weak transcription	Aorta	Aorta
10	chr6:131215600-131233800	Weak transcription	Pancreas	Pancrea
11	chr6:131216600-131233800	Weak transcription	Ovary	ovary
12	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:131222200-131234000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:131222200-131234200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:131222200-131234400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:131222200-131236400	Weak transcription	Fetal Lung	lung
17	chr6:131222200-131248400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:131222200-131251800	Weak transcription	Primary B cells from cord blood	blood
19	chr6:131222400-131232800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:131222400-131233200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:131222400-131233200	Weak transcription	HSMMtube	muscle
22	chr6:131222400-131233800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:131222400-131238200	Weak transcription	Dnd41	blood
24	chr6:131222400-131248600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:131222600-131241200	Weak transcription	A549	lung
26	chr6:131223600-131233600	Weak transcription	Lung	lung
27	chr6:131224200-131233000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr6:131224400-131233600	Weak transcription	Fetal Stomach	stomach
29	chr6:131224400-131241600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:131228600-131233600	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr6:131228800-131233000	Weak transcription	HSMM	muscle
32	chr6:131228800-131245800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:131229400-131234200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:131229400-131234400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr6:131229400-131245200	Weak transcription	Adipose Nuclei	Adipose
36	chr6:131229600-131233000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:131229600-131233000	Weak transcription	Brain Angular Gyrus	brain
38	chr6:131229600-131233000	Weak transcription	Brain Anterior Caudate	brain
39	chr6:131229600-131233000	Weak transcription	Brain Cingulate Gyrus	brain
40	chr6:131229600-131233000	Weak transcription	Brain Hippocampus Middle	brain
41	chr6:131229600-131233000	Weak transcription	Left Ventricle	heart
42	chr6:131229600-131234400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:131229600-131234400	Weak transcription	Small Intestine	intestine
44	chr6:131229600-131245400	Weak transcription	NHLF	lung
45	chr6:131229600-131248600	Weak transcription	Stomach Mucosa	stomach
46	chr6:131229600-131249600	Weak transcription	Osteobl	bone
47	chr6:131229800-131233000	Weak transcription	Brain Substantia Nigra	brain
48	chr6:131229800-131242400	Weak transcription	HepG2	liver
49	chr6:131230400-131233000	Weak transcription	Fetal Muscle Leg	muscle
50	chr6:131230400-131233800	Weak transcription	GM12878-XiMat	blood

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