Variant report

Variant	rs9492767
Chromosome Location	chr6:131273010-131273011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1043596	0.83[JPT][hapmap]
rs11154610	0.84[ASN][1000 genomes]
rs12110524	0.87[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12194612	0.83[JPT][hapmap]
rs12206057	0.88[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12526896	0.82[AMR][1000 genomes]
rs12530288	0.90[LWK][hapmap];0.81[MKK][hapmap];0.82[AMR][1000 genomes]
rs3777438	0.94[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs3777454	0.85[ASN][1000 genomes]
rs3777457	0.88[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs6569713	0.85[ASN][1000 genomes]
rs66773803	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6938586	0.88[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs6939358	0.82[ASN][1000 genomes]
rs6941712	0.89[LWK][hapmap];0.81[MKK][hapmap];0.82[AMR][1000 genomes]
rs7747517	0.83[ASN][1000 genomes]
rs867707	0.89[JPT][hapmap]
rs915172	0.89[JPT][hapmap]
rs9321265	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.92[ASN][1000 genomes]
rs9492773	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9492775	0.94[CHB][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9492767	EPB41L2	cis	parietal	SCAN
rs9492767	EPB41L2	Cis_1M	lymphoblastoid	RTeQTL
rs9492767	MOXD1	cis	parietal	SCAN

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
4	chr6:131255000-131274600	Weak transcription	Fetal Stomach	stomach
5	chr6:131255200-131276000	Weak transcription	Left Ventricle	heart
6	chr6:131255400-131276200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:131255400-131288800	Weak transcription	Fetal Kidney	kidney
8	chr6:131255800-131276200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:131255800-131277400	Weak transcription	Psoas Muscle	Psoas
10	chr6:131256000-131279400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:131257400-131281800	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:131260000-131286200	Weak transcription	HSMMtube	muscle
13	chr6:131264800-131277800	Weak transcription	Gastric	stomach
14	chr6:131265600-131276000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:131265800-131274400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:131266000-131275000	Weak transcription	A549	lung
17	chr6:131266000-131280600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:131266000-131283800	Weak transcription	Lung	lung
19	chr6:131266000-131287600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:131266600-131274400	Weak transcription	Ovary	ovary
21	chr6:131266800-131274400	Weak transcription	Aorta	Aorta
22	chr6:131266800-131277200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:131266800-131287200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:131267000-131286000	Weak transcription	Brain Angular Gyrus	brain
25	chr6:131267000-131294800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:131267200-131273600	Weak transcription	Fetal Intestine Small	intestine
27	chr6:131267200-131277000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:131267200-131277200	Weak transcription	Small Intestine	intestine
29	chr6:131267200-131281200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr6:131267200-131282200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr6:131267400-131279600	Weak transcription	HMEC	breast
32	chr6:131267400-131280200	Weak transcription	Brain Anterior Caudate	brain
33	chr6:131267400-131281600	Weak transcription	GM12878-XiMat	blood
34	chr6:131267400-131286000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:131267400-131287200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr6:131267600-131273200	Weak transcription	Fetal Lung	lung
37	chr6:131267600-131275600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:131267600-131275600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr6:131267600-131284000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:131267600-131287200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr6:131267800-131276000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:131267800-131286000	Weak transcription	NHDF-Ad	bronchial
43	chr6:131267800-131288200	Weak transcription	NH-A	brain
44	chr6:131268200-131279400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr6:131268400-131274400	Weak transcription	Osteobl	bone
46	chr6:131268400-131279800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:131268400-131280600	Weak transcription	Brain Hippocampus Middle	brain
48	chr6:131268400-131287200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:131269000-131274200	Weak transcription	Adipose Nuclei	Adipose
50	chr6:131269000-131274400	Weak transcription	NHLF	lung

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