Variant report

Variant	rs66773803
Chromosome Location	chr6:131288525-131288526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:131285017..131288807-chr6:131289178..131292280,3	K562	blood:
2	chr6:131286503..131288563-chr6:131317280..131319051,2	K562	blood:
3	chr6:131287420..131290006-chr6:131292145..131295330,3	K562	blood:
4	chr6:131288021..131290598-chr6:131292488..131295330,3	K562	blood:

Variant related genes	Relation type
ENSG00000079819	Chromatin interaction

rs_ID	r²[population]
rs11154610	0.81[ASN][1000 genomes]
rs12110524	0.80[ASN][1000 genomes]
rs12206057	0.80[ASN][1000 genomes]
rs12526896	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12530288	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3777438	0.81[ASN][1000 genomes]
rs3777454	0.82[ASN][1000 genomes]
rs3777457	0.80[ASN][1000 genomes]
rs6569713	0.82[ASN][1000 genomes]
rs6941712	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7747517	0.80[ASN][1000 genomes]
rs9321265	0.98[ASN][1000 genomes]
rs9492767	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9492773	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9492775	0.98[ASN][1000 genomes]

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:131255400-131288800	Weak transcription	Fetal Kidney	kidney
3	chr6:131267000-131294800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:131269000-131290400	Weak transcription	Right Ventricle	heart
5	chr6:131272200-131301000	Weak transcription	Placenta	Placenta
6	chr6:131272800-131289000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:131274400-131289000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:131276400-131288800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:131277000-131288600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:131277400-131290000	Weak transcription	Fetal Intestine Small	intestine
11	chr6:131277600-131288800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:131284400-131288600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:131284400-131289200	Weak transcription	Left Ventricle	heart
14	chr6:131286000-131289200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:131286200-131288800	Enhancers	HSMMtube	muscle
16	chr6:131286200-131289000	Enhancers	Osteobl	bone
17	chr6:131286200-131290800	Weak transcription	Liver	Liver
18	chr6:131286200-131293600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:131286800-131289200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:131286800-131289200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:131286800-131290200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:131286800-131291600	Active TSS	Aorta	Aorta
23	chr6:131287000-131288600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:131287000-131289400	Enhancers	NHDF-Ad	bronchial
25	chr6:131287000-131290800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:131287200-131289200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr6:131287200-131289200	Enhancers	H9 Cell Line	embryonic stem cell
28	chr6:131287200-131289800	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr6:131287400-131288600	Weak transcription	HepG2	liver
30	chr6:131287400-131289400	Enhancers	Brain Cingulate Gyrus	brain
31	chr6:131287400-131289600	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr6:131287400-131290800	Enhancers	Fetal Heart	heart
33	chr6:131287600-131288600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr6:131287600-131288800	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr6:131287600-131289000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
36	chr6:131287600-131289000	Enhancers	Brain Angular Gyrus	brain
37	chr6:131287600-131289000	Enhancers	Brain Anterior Caudate	brain
38	chr6:131287600-131289200	Enhancers	Brain Substantia Nigra	brain
39	chr6:131287600-131289400	Enhancers	Fetal Brain Male	brain
40	chr6:131287600-131289800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr6:131287600-131289800	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr6:131287600-131291800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr6:131287800-131288600	Enhancers	Fetal Muscle Leg	muscle
44	chr6:131287800-131288600	Enhancers	K562	blood
45	chr6:131287800-131288800	Enhancers	Psoas Muscle	Psoas
46	chr6:131287800-131289200	Enhancers	Fetal Stomach	stomach
47	chr6:131287800-131289400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:131287800-131289600	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr6:131288000-131288600	Enhancers	Colon Smooth Muscle	Colon
50	chr6:131288000-131288800	Weak transcription	Small Intestine	intestine

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