Variant report

Variant	rs3777454
Chromosome Location	chr6:131240210-131240211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11154610	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12110524	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12206057	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12664445	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2275509	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3777438	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777457	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3777458	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3777465	0.81[AMR][1000 genomes]
rs3822861	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4323333	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4357159	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6569713	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66773803	0.82[ASN][1000 genomes]
rs6938586	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6939358	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7747517	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9321260	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9321265	0.81[ASN][1000 genomes]
rs9483192	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9492755	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9492756	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9492767	0.85[ASN][1000 genomes]
rs9492775	0.81[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131222200-131248400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:131222200-131251800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:131222400-131248600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:131222600-131241200	Weak transcription	A549	lung
6	chr6:131224400-131241600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:131228800-131245800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:131229400-131245200	Weak transcription	Adipose Nuclei	Adipose
9	chr6:131229600-131245400	Weak transcription	NHLF	lung
10	chr6:131229600-131248600	Weak transcription	Stomach Mucosa	stomach
11	chr6:131229600-131249600	Weak transcription	Osteobl	bone
12	chr6:131229800-131242400	Weak transcription	HepG2	liver
13	chr6:131233800-131241400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr6:131234000-131250200	Weak transcription	Ovary	ovary
15	chr6:131234000-131250600	Weak transcription	Fetal Stomach	stomach
16	chr6:131234600-131244200	Weak transcription	Brain Substantia Nigra	brain
17	chr6:131234600-131244200	Weak transcription	Small Intestine	intestine
18	chr6:131234600-131244600	Weak transcription	Left Ventricle	heart
19	chr6:131234600-131248600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:131234600-131249400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:131234600-131250200	Weak transcription	Pancreas	Pancrea
22	chr6:131234800-131244400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:131234800-131245000	Weak transcription	HSMM	muscle
24	chr6:131234800-131246800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:131234800-131247200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr6:131234800-131254000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
28	chr6:131235800-131244200	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:131236400-131254000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:131238000-131244800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:131238400-131242200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:131238400-131248800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:131238400-131249800	Weak transcription	Colon Smooth Muscle	Colon
34	chr6:131238400-131250200	Weak transcription	Aorta	Aorta
35	chr6:131239200-131252600	Weak transcription	Dnd41	blood
36	chr6:131239800-131244200	Weak transcription	Fetal Lung	lung
37	chr6:131240000-131253600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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