Variant report

Variant	rs6921396
Chromosome Location	chr6:131291390-131291391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1043596	0.80[CEU][hapmap]
rs12194612	0.80[CEU][hapmap]
rs12525104	0.89[ASN][1000 genomes]
rs12525986	1.00[ASN][1000 genomes]
rs13437326	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17178878	0.95[ASN][1000 genomes]
rs17179123	0.95[ASN][1000 genomes]
rs17180687	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17180867	0.89[ASN][1000 genomes]
rs17770255	1.00[JPT][hapmap]
rs17784418	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17784472	0.89[ASN][1000 genomes]
rs17784896	0.87[ASN][1000 genomes]
rs17785507	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1811949	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1977576	0.95[ASN][1000 genomes]
rs2095961	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2297853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28482889	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs34899420	0.95[ASN][1000 genomes]
rs3777465	0.82[AFR][1000 genomes]
rs45550834	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4895901	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4895903	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs4895904	0.89[ASN][1000 genomes]
rs4895906	0.89[ASN][1000 genomes]
rs4895907	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4895908	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4895909	0.89[ASN][1000 genomes]
rs4897473	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4897478	0.95[ASN][1000 genomes]
rs4897484	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4897485	1.00[JPT][hapmap]
rs4897486	0.89[ASN][1000 genomes]
rs4897487	0.89[ASN][1000 genomes]
rs4897489	0.89[ASN][1000 genomes]
rs4897491	0.89[ASN][1000 genomes]
rs55898152	0.89[ASN][1000 genomes]
rs56163502	0.89[ASN][1000 genomes]
rs56173113	1.00[ASN][1000 genomes]
rs56201801	0.89[ASN][1000 genomes]
rs62422362	0.89[ASN][1000 genomes]
rs62422365	0.89[ASN][1000 genomes]
rs62422380	0.89[ASN][1000 genomes]
rs62423581	1.00[ASN][1000 genomes]
rs62423598	0.95[ASN][1000 genomes]
rs6906059	0.84[ASN][1000 genomes]
rs6906478	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6908980	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6910656	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6916024	0.89[ASN][1000 genomes]
rs6922045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922177	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6926250	1.00[CHB][hapmap]
rs6928920	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6931804	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6935108	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7741148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755720	1.00[ASN][1000 genomes]
rs7758016	0.87[ASN][1000 genomes]
rs7761311	0.84[CEU][hapmap];0.82[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs7769678	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771543	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872576	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs915172	0.80[CEU][hapmap]
rs9321263	0.96[CEU][hapmap];0.82[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs933063	0.84[CEU][hapmap]
rs9372985	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9385568	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388872	0.82[ASN][1000 genomes]
rs9402303	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs942	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9483206	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs954211	0.82[CHB][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6921396	EPB41L2	cis	parietal	SCAN
rs6921396	EPB41L2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:131267000-131294800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:131272200-131301000	Weak transcription	Placenta	Placenta
4	chr6:131286200-131293600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:131286800-131291600	Active TSS	Aorta	Aorta
6	chr6:131287600-131291800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
7	chr6:131288200-131291600	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr6:131288200-131306600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:131288400-131291800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:131288600-131292200	Weak transcription	K562	blood
11	chr6:131288800-131291400	Active TSS	Psoas Muscle	Psoas
12	chr6:131288800-131291600	Active TSS	Fetal Muscle Trunk	muscle
13	chr6:131288800-131291600	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr6:131288800-131291600	Active TSS	Stomach Smooth Muscle	stomach
15	chr6:131289000-131291400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:131289000-131292000	Flanking Active TSS	Osteobl	bone
17	chr6:131289000-131294800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:131289200-131291400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:131289200-131292200	Weak transcription	Fetal Thymus	thymus
20	chr6:131289200-131294800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:131289200-131294800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:131289400-131291400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:131289400-131291600	Active TSS	Brain Hippocampus Middle	brain
24	chr6:131289400-131291600	Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr6:131289400-131291800	Active TSS	NHLF	lung
26	chr6:131289400-131296400	Weak transcription	HUVEC	blood vessel
27	chr6:131289600-131291600	Active TSS	Fetal Stomach	stomach
28	chr6:131289600-131291600	Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr6:131289600-131291800	Active TSS	Ovary	ovary
30	chr6:131289600-131298200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:131289600-131300800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr6:131289800-131291400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:131289800-131291400	Active TSS	Fetal Muscle Leg	muscle
34	chr6:131289800-131291400	Active TSS	HSMM	muscle
35	chr6:131289800-131291600	Active TSS	Fetal Kidney	kidney
36	chr6:131289800-131291600	Active TSS	Right Atrium	heart
37	chr6:131289800-131291600	Active TSS	NHDF-Ad	bronchial
38	chr6:131289800-131294400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr6:131289800-131294800	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr6:131289800-131298000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:131290000-131291400	Active TSS	Rectal Smooth Muscle	rectum
42	chr6:131290200-131291400	Enhancers	Brain Cingulate Gyrus	brain
43	chr6:131290200-131291400	ZNF genes & repeats	Fetal Brain Male	brain
44	chr6:131290200-131291600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
45	chr6:131290200-131294800	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr6:131290400-131291400	Flanking Active TSS	Duodenum Mucosa	Duodenum
47	chr6:131290400-131291400	Active TSS	Right Ventricle	heart
48	chr6:131290400-131291800	Active TSS	Fetal Lung	lung
49	chr6:131290600-131291400	Active TSS	HSMMtube	muscle
50	chr6:131290600-131291600	Active TSS	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links