Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11029025	0.82[ASN][1000 genomes]
rs11029066	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11602363	0.81[ASN][1000 genomes]
rs1215897	0.92[ASN][1000 genomes]
rs1310099	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1441491	0.83[ASN][1000 genomes]
rs167878	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs179189	0.82[ASN][1000 genomes]
rs1837782	0.83[EUR][1000 genomes]
rs184495	0.80[ASN][1000 genomes]
rs2249568	0.81[ASN][1000 genomes]
rs2249717	0.81[ASN][1000 genomes]
rs228189	0.81[ASN][1000 genomes]
rs3103399	0.94[ASN][1000 genomes]
rs328466	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs328467	0.80[ASN][1000 genomes]
rs328468	0.80[ASN][1000 genomes]
rs328469	0.80[ASN][1000 genomes]
rs328470	0.92[ASN][1000 genomes]
rs328471	0.92[ASN][1000 genomes]
rs328484	0.82[ASN][1000 genomes]
rs328486	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs328487	0.81[ASN][1000 genomes]
rs328488	0.81[ASN][1000 genomes]
rs4922749	0.83[ASN][1000 genomes]
rs61885276	0.80[ASN][1000 genomes]
rs61885280	0.81[ASN][1000 genomes]
rs7125344	0.88[EUR][1000 genomes]
rs894174	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832091	chr11:25823826-26009887	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv469948	chr11:25859783-26026233	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25992000-25993000	Enhancers	NHEK	skin
2	chr11:25992400-25992800	Enhancers	HMEC	breast
3	chr11:25992600-25993000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:25992600-25993000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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