Variant report
| Variant | rs328486 |
|---|---|
| Chromosome Location | chr11:26009501-26009502 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11029025 | 0.83[ASN][1000 genomes] |
| rs11029066 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11602363 | 0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1215897 | 0.92[ASN][1000 genomes] |
| rs1310099 | 0.96[ASN][1000 genomes] |
| rs1441491 | 0.84[ASN][1000 genomes] |
| rs167878 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs179189 | 0.81[ASN][1000 genomes] |
| rs1837782 | 0.84[EUR][1000 genomes] |
| rs184495 | 0.84[EUR][1000 genomes] |
| rs2249568 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2249717 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs228189 | 0.81[ASN][1000 genomes] |
| rs228190 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3103399 | 0.94[ASN][1000 genomes] |
| rs328466 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs328467 | 0.80[ASN][1000 genomes] |
| rs328468 | 0.80[ASN][1000 genomes] |
| rs328469 | 0.80[ASN][1000 genomes] |
| rs328470 | 0.92[ASN][1000 genomes] |
| rs328471 | 0.92[ASN][1000 genomes] |
| rs328484 | 0.81[ASN][1000 genomes] |
| rs328487 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs328488 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4922749 | 0.84[ASN][1000 genomes] |
| rs61885276 | 0.80[ASN][1000 genomes] |
| rs61885280 | 0.82[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7928222 | 0.82[EUR][1000 genomes] |
| rs894174 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2760599 | chr11:25186984-26159450 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1046507 | chr11:25469712-26111707 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv832091 | chr11:25823826-26009887 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv469948 | chr11:25859783-26026233 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1041778 | chr11:25898574-26098141 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:26004200-26009600 | Weak transcription | Fetal Lung | lung |
| 2 | chr11:26008200-26011600 | Weak transcription | Hela-S3 | cervix |
