Variant report

Variant	rs2282823
Chromosome Location	chr6:15478336-15478337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15469193..15474455-chr6:15475135..15479397,6	K562	blood:
2	chr6:15478158..15480159-chr6:15489862..15492490,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1474587	0.91[JPT][hapmap]
rs2282816	0.90[JPT][hapmap];0.95[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2299055	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes]
rs3915734	0.81[JPT][hapmap]
rs707828	1.00[JPT][hapmap]
rs707829	1.00[JPT][hapmap]
rs707830	1.00[JPT][hapmap]
rs707831	1.00[JPT][hapmap]
rs707835	1.00[JPT][hapmap]
rs707836	1.00[JPT][hapmap]
rs707839	1.00[JPT][hapmap]
rs760658	0.90[JPT][hapmap];0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs760659	0.91[JPT][hapmap]
rs794775	0.91[JPT][hapmap]
rs794776	1.00[JPT][hapmap]
rs794777	1.00[JPT][hapmap]
rs794778	1.00[JPT][hapmap]
rs794783	1.00[JPT][hapmap]
rs794785	1.00[JPT][hapmap]
rs794786	0.82[JPT][hapmap]
rs794789	0.83[JPT][hapmap]
rs794792	1.00[JPT][hapmap]
rs794793	0.82[JPT][hapmap]
rs794795	1.00[JPT][hapmap]
rs9383048	1.00[JPT][hapmap]
rs9396584	0.92[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15435800-15487600	Weak transcription	Colonic Mucosa	Colon
2	chr6:15446600-15479800	Weak transcription	Gastric	stomach
3	chr6:15448200-15479800	Weak transcription	Pancreas	Pancrea
4	chr6:15453000-15481000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:15457000-15480800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:15458400-15484200	Weak transcription	Small Intestine	intestine
7	chr6:15460800-15480000	Weak transcription	Stomach Mucosa	stomach
8	chr6:15461600-15491000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:15463000-15479800	Weak transcription	Fetal Brain Male	brain
10	chr6:15463800-15479800	Weak transcription	Brain Germinal Matrix	brain
11	chr6:15464800-15479800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:15465600-15480000	Weak transcription	Fetal Brain Female	brain
13	chr6:15468800-15478400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:15469400-15480400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:15469600-15481200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:15470000-15478800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:15470000-15480000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:15470200-15481600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:15471000-15488200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:15471000-15502000	Weak transcription	A549	lung
21	chr6:15471400-15481000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr6:15471400-15488200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:15471800-15480000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr6:15472000-15484200	Weak transcription	Liver	Liver
25	chr6:15473200-15478400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:15474000-15478400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
27	chr6:15474000-15478400	Enhancers	NHLF	lung
28	chr6:15474200-15478400	Genic enhancers	HUES48 Cell Line	embryonic stem cell
29	chr6:15474400-15480600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr6:15474600-15480000	Weak transcription	HSMMtube	muscle
31	chr6:15474800-15479800	Weak transcription	HSMM	muscle
32	chr6:15475200-15479200	Weak transcription	HMEC	breast
33	chr6:15475400-15478400	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr6:15475400-15480000	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr6:15475600-15478600	Enhancers	Left Ventricle	heart
36	chr6:15475600-15480200	Enhancers	Right Ventricle	heart
37	chr6:15475800-15478400	Enhancers	Aorta	Aorta
38	chr6:15476000-15478600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr6:15476000-15478800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:15476000-15479400	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr6:15476000-15481600	Weak transcription	K562	blood
42	chr6:15476000-15487400	Weak transcription	Duodenum Mucosa	Duodenum
43	chr6:15476200-15478400	Enhancers	Colon Smooth Muscle	Colon
44	chr6:15476200-15478400	Enhancers	Fetal Heart	heart
45	chr6:15476200-15478400	Enhancers	Osteobl	bone
46	chr6:15476200-15479400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:15476200-15479800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:15476200-15480400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
49	chr6:15476200-15481400	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr6:15476200-15486600	Weak transcription	Dnd41	blood

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