Variant report

Variant	rs707836
Chromosome Location	chr6:15349589-15349590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15340578..15343922-chr6:15348379..15351568,3	K562	blood:
2	chr6:15339473..15343526-chr6:15347239..15351934,4	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11968075	0.96[AFR][1000 genomes]
rs1474587	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs16876233	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs2282816	0.90[JPT][hapmap]
rs2282823	1.00[JPT][hapmap]
rs2299055	1.00[JPT][hapmap]
rs3857641	0.89[ASW][hapmap];0.87[LWK][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs3915734	0.90[JPT][hapmap]
rs3954	0.89[CHB][hapmap]
rs707828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs707829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs707830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs707831	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs707835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707838	0.90[CHB][hapmap]
rs707839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs760658	0.90[JPT][hapmap]
rs760659	0.90[JPT][hapmap]
rs794775	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs794776	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs794777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs794778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs794779	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs794783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs794784	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs794785	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs794786	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs794788	0.81[CHB][hapmap]
rs794789	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs794792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs794793	0.81[CHB][hapmap];0.82[JPT][hapmap];0.82[TSI][hapmap]
rs794795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs794797	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9383048	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv538144	chr6:15310696-15364984	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15327800-15375800	Weak transcription	Aorta	Aorta
2	chr6:15332000-15355800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:15332000-15359400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:15333200-15351400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:15334800-15350200	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr6:15335400-15349800	Enhancers	Fetal Thymus	thymus
7	chr6:15338000-15351600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:15338400-15349800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:15338400-15351600	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:15338800-15350600	Weak transcription	Adipose Nuclei	Adipose
11	chr6:15338800-15351600	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:15339400-15351600	Weak transcription	Right Atrium	heart
13	chr6:15341000-15362800	Weak transcription	Fetal Intestine Small	intestine
14	chr6:15341200-15359400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:15341400-15365400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:15341600-15350800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr6:15341600-15352200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:15341800-15351600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:15341800-15352600	Weak transcription	Pancreas	Pancrea
20	chr6:15341800-15362800	Weak transcription	Gastric	stomach
21	chr6:15341800-15378400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:15342000-15350200	Weak transcription	NHEK	skin
23	chr6:15342000-15351200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:15342000-15351800	Weak transcription	HSMM	muscle
25	chr6:15342000-15352800	Weak transcription	Fetal Kidney	kidney
26	chr6:15342600-15349600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:15342600-15349800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:15342600-15350200	Weak transcription	HMEC	breast
29	chr6:15342600-15351600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:15342600-15351600	Weak transcription	Esophagus	oesophagus
31	chr6:15342600-15352000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:15342600-15352600	Weak transcription	Stomach Mucosa	stomach
33	chr6:15342800-15350800	Weak transcription	Brain Hippocampus Middle	brain
34	chr6:15342800-15351400	Weak transcription	Brain Angular Gyrus	brain
35	chr6:15342800-15351600	Weak transcription	Brain Substantia Nigra	brain
36	chr6:15342800-15351600	Weak transcription	Lung	lung
37	chr6:15342800-15352000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:15342800-15364600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr6:15343400-15353400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr6:15344200-15350200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:15344200-15351200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:15344200-15351600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr6:15344200-15351600	Weak transcription	Psoas Muscle	Psoas
44	chr6:15344400-15351400	Weak transcription	Stomach Smooth Muscle	stomach
45	chr6:15344400-15351600	Weak transcription	Left Ventricle	heart
46	chr6:15344600-15351600	Weak transcription	Brain Anterior Caudate	brain
47	chr6:15344800-15350600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr6:15344800-15351800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr6:15345200-15349600	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr6:15345400-15351400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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