Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:79304951..79305958-chr1:79662942..79663752,3	MCF-7	breast:
2	chr1:79154179..79155005-chr1:79663219..79663974,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10747361	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11162675	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11162686	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs12027436	0.89[EUR][1000 genomes]
rs1331709	0.96[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap]
rs1331713	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1331714	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1331716	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1331723	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs170613	0.84[AMR][1000 genomes]
rs228471	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs228481	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs228488	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs228505	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228509	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228513	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228539	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs228545	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs228546	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4650405	0.81[EUR][1000 genomes]
rs7546136	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830326	chr1:79573379-79735667	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv999471	chr1:79650363-79774433	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79659400-79664200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:79659400-79664200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:79659400-79664200	Weak transcription	NHDF-Ad	bronchial
4	chr1:79659600-79664400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:79659800-79663800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:79659800-79664200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:79659800-79664200	Weak transcription	Osteobl	bone
8	chr1:79660000-79664000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:79660200-79664000	Weak transcription	Hela-S3	cervix
10	chr1:79660200-79664200	Weak transcription	HUVEC	blood vessel

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