Variant report

Variant	rs2285448
Chromosome Location	chr19:35795979-35795980
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:35795890-35796346	K562	blood:	n/a	n/a
2	HEY1	chr19:35795884-35796297	K562	blood:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:35794875..35797641-chr19:35798078..35800124,2	MCF-7	breast:
2	chr19:35794912..35797272-chr19:35941605..35944464,2	MCF-7	breast:
3	chr19:35757193..35760230-chr19:35795583..35800096,4	K562	blood:
4	chr19:35795438..35798240-chr19:35810195..35811788,2	MCF-7	breast:
5	chr19:35757837..35761370-chr19:35793689..35797278,5	MCF-7	breast:
6	chr19:35791001..35793580-chr19:35794123..35796268,2	MCF-7	breast:
7	chr19:35711748..35715116-chr19:35794768..35797125,3	K562	blood:
8	chr19:35788362..35791092-chr19:35794304..35796037,2	MCF-7	breast:
9	chr19:35794837..35799903-chr19:35800719..35807404,10	MCF-7	breast:
10	chr19:35759321..35763199-chr19:35795656..35798701,4	MCF-7	breast:

No data

Variant related genes	Relation type
MAG	TF binding region
ENSG00000105698	Chromatin interaction
ENSG00000105695	Chromatin interaction
ENSG00000105699	Chromatin interaction
ENSG00000012124	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16970232	1.00[EUR][1000 genomes]
rs16970236	1.00[EUR][1000 genomes]
rs25677	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2872113	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59786647	1.00[EUR][1000 genomes]
rs6510476	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv510765	chr19:35708226-35890668	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	esv2758497	chr19:35711078-35887113	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	esv2758758	chr19:35711078-35887113	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv911618	chr19:35734107-35807845	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	nsv833810	chr19:35782588-35971959	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35774800-35809600	Weak transcription	Right Atrium	heart
2	chr19:35789200-35796800	Genic enhancers	Brain Cingulate Gyrus	brain
3	chr19:35789600-35796200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr19:35789600-35796600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr19:35790000-35797800	Weak transcription	Fetal Kidney	kidney
6	chr19:35790200-35796400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr19:35791400-35798800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr19:35791600-35796200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:35792200-35796000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr19:35792400-35796200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr19:35792800-35796000	Enhancers	K562	blood
12	chr19:35792800-35801400	Genic enhancers	Brain Hippocampus Middle	brain
13	chr19:35793600-35796000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr19:35794400-35810000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr19:35794600-35796800	Genic enhancers	Brain Substantia Nigra	brain
16	chr19:35794600-35799400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr19:35795000-35797800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr19:35795000-35800400	Enhancers	HepG2	liver
19	chr19:35795200-35796000	Weak transcription	Brain Angular Gyrus	brain
20	chr19:35795200-35796000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr19:35795200-35796400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr19:35795200-35798800	Weak transcription	Spleen	Spleen
23	chr19:35795800-35796000	Genic enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links