Variant report

Variant	rs6510476
Chromosome Location	chr19:35784166-35784167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:35606649..35608859-chr19:35781866..35784832,2	MCF-7	breast:
2	chr19:35759335..35760940-chr19:35784141..35785993,2	K562	blood:
3	chr19:35775470..35777616-chr19:35783839..35785786,2	K562	blood:
4	chr19:35783695..35786395-chr19:35798679..35800837,2	K562	blood:

Variant related genes	Relation type
ENSG00000105695	Chromatin interaction
ENSG00000089356	Chromatin interaction
ENSG00000105698	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10153449	0.85[CEU][hapmap]
rs2285448	0.89[JPT][hapmap]
rs2301598	0.94[ASN][1000 genomes]
rs55976703	0.97[EUR][1000 genomes]
rs56312603	0.85[EUR][1000 genomes]
rs73031716	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv510765	chr19:35708226-35890668	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	esv2758497	chr19:35711078-35887113	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	esv2758758	chr19:35711078-35887113	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv911618	chr19:35734107-35807845	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	esv1836312	chr19:35741456-35786868	Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	n/a
9	nsv833810	chr19:35782588-35971959	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs6510476	CD177	cis	parietal	SCAN
rs6510476	LGALS13	cis	parietal	SCAN
rs6510476	FCGBP	cis	cerebellum	SCAN
rs6510476	DEDD2	cis	cerebellum	SCAN
rs6510476	LYPD4	cis	cerebellum	SCAN

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35774800-35809600	Weak transcription	Right Atrium	heart
2	chr19:35776200-35784200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:35776200-35786400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr19:35781800-35785200	Active TSS	Brain Cingulate Gyrus	brain
5	chr19:35782000-35784200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr19:35782000-35785000	Active TSS	Brain Substantia Nigra	brain
7	chr19:35782200-35784200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr19:35782200-35785200	Active TSS	Brain Anterior Caudate	brain
9	chr19:35782200-35785400	Active TSS	Brain Angular Gyrus	brain
10	chr19:35782400-35784200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr19:35782400-35784600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr19:35782400-35785000	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr19:35783000-35785000	Active TSS	Brain Hippocampus Middle	brain
14	chr19:35783200-35784600	Enhancers	Primary B cells from peripheral blood	blood
15	chr19:35783400-35785000	Bivalent Enhancer	Placenta	Placenta
16	chr19:35783600-35784800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr19:35783800-35785200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr19:35783800-35785400	Bivalent Enhancer	Fetal Stomach	stomach
19	chr19:35783800-35785800	Weak transcription	Primary B cells from cord blood	blood
20	chr19:35784000-35784200	Bivalent/Poised TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr19:35784000-35784400	Bivalent Enhancer	Fetal Lung	lung
22	chr19:35784000-35784600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
23	chr19:35784000-35784600	Weak transcription	Gastric	stomach
24	chr19:35784000-35785000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr19:35784000-35785000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
26	chr19:35784000-35785400	Enhancers	H1 Cell Line	embryonic stem cell
27	chr19:35784000-35785400	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr19:35784000-35785400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr19:35784000-35785400	Enhancers	Spleen	Spleen
30	chr19:35784000-35786400	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr19:35784000-35790200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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