Variant report

Variant	rs2285919
Chromosome Location	chr22:31355635-31355636
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31354949..31372607-chr22:31475365..31485377,53	MCF-7	breast:
2	chr22:31352727..31355658-chr22:31478045..31481685,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183963	Chromatin interaction
ENSG00000273387	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2269897	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9606794	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9609144	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9609160	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9609163	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9609172	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9609198	0.82[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2285919	TUG1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31317600-31364000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr22:31319800-31355800	Strong transcription	HUES48 Cell Line	embryonic stem cell
3	chr22:31320200-31355800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
4	chr22:31324800-31360400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr22:31342400-31361000	Weak transcription	Small Intestine	intestine
6	chr22:31343800-31356400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr22:31344600-31363600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr22:31344800-31361600	Weak transcription	Fetal Heart	heart
9	chr22:31345400-31364000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr22:31345600-31364200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr22:31346000-31364400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr22:31346200-31364200	Weak transcription	Brain Substantia Nigra	brain
13	chr22:31346600-31356600	Weak transcription	Colonic Mucosa	Colon
14	chr22:31347200-31363000	Weak transcription	Colon Smooth Muscle	Colon
15	chr22:31347200-31364400	Weak transcription	Esophagus	oesophagus
16	chr22:31347400-31359400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr22:31347400-31362400	Weak transcription	Gastric	stomach
18	chr22:31347400-31362400	Weak transcription	Lung	lung
19	chr22:31347400-31363000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr22:31347400-31363800	Weak transcription	NHLF	lung
21	chr22:31347600-31359400	Weak transcription	Pancreas	Pancrea
22	chr22:31347600-31363000	Weak transcription	Spleen	Spleen
23	chr22:31347600-31363400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr22:31347600-31363400	Weak transcription	HMEC	breast
25	chr22:31347600-31364000	Weak transcription	Fetal Kidney	kidney
26	chr22:31347800-31355800	Weak transcription	GM12878-XiMat	blood
27	chr22:31348000-31358200	Weak transcription	Fetal Intestine Small	intestine
28	chr22:31348600-31362800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr22:31348800-31363000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr22:31348800-31363800	Weak transcription	Brain Angular Gyrus	brain
31	chr22:31348800-31364000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr22:31349000-31363000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr22:31349000-31364400	Weak transcription	Aorta	Aorta
34	chr22:31349200-31359600	Weak transcription	K562	blood
35	chr22:31349200-31360400	Weak transcription	Hela-S3	cervix
36	chr22:31349200-31363600	Weak transcription	Brain Hippocampus Middle	brain
37	chr22:31349200-31364200	Weak transcription	Thymus	Thymus
38	chr22:31349400-31359800	Weak transcription	Dnd41	blood
39	chr22:31349400-31364400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr22:31349600-31359800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr22:31349800-31360000	Weak transcription	Right Ventricle	heart
42	chr22:31349800-31363800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr22:31349800-31363800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr22:31349800-31363800	Weak transcription	Brain Cingulate Gyrus	brain
45	chr22:31349800-31363800	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr22:31349800-31364200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr22:31350400-31364200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr22:31350600-31363000	Weak transcription	Psoas Muscle	Psoas
49	chr22:31350800-31357600	Weak transcription	Brain Germinal Matrix	brain
50	chr22:31350800-31363000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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