Variant report

Variant	rs9606794
Chromosome Location	chr22:31391386-31391387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12152151	0.83[ASN][1000 genomes]
rs2285919	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55646570	0.83[ASN][1000 genomes]
rs7284438	0.83[ASN][1000 genomes]
rs8142236	0.83[ASN][1000 genomes]
rs9606799	0.95[ASN][1000 genomes]
rs9609154	0.81[ASN][1000 genomes]
rs9609155	0.81[ASN][1000 genomes]
rs9609157	0.81[ASN][1000 genomes]
rs9609160	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9609163	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9609172	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9609189	0.85[ASN][1000 genomes]
rs9609192	0.85[ASN][1000 genomes]
rs9609197	0.83[ASN][1000 genomes]
rs9609198	0.82[AFR][1000 genomes]
rs9609199	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9896	chr22:31369204-31513933	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9606794	TUG1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31390600-31394200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr22:31390800-31391400	Enhancers	Gastric	stomach
3	chr22:31390800-31391600	Enhancers	K562	blood
4	chr22:31390800-31392000	Enhancers	GM12878-XiMat	blood
5	chr22:31390800-31392200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr22:31391000-31391400	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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