Variant report

Variant	rs9609189
Chromosome Location	chr22:31415586-31415587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12152151	0.88[ASN][1000 genomes]
rs55646570	0.88[ASN][1000 genomes]
rs7284438	0.88[ASN][1000 genomes]
rs8142236	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9606794	0.85[ASN][1000 genomes]
rs9606799	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9606806	0.84[ASN][1000 genomes]
rs9609154	0.83[EUR][1000 genomes]
rs9609155	0.83[EUR][1000 genomes]
rs9609157	0.84[EUR][1000 genomes]
rs9609168	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9609192	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609197	0.88[ASN][1000 genomes]
rs9609199	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9896	chr22:31369204-31513933	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv966103	chr22:31410201-31452981	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	esv3396561	chr22:31413377-31415925	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9609189	TUG1	Cis_1M	lymphoblastoid	RTeQTL
rs9609189	MORC2-AS1	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31415000-31416000	Enhancers	Esophagus	oesophagus
2	chr22:31415000-31416600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr22:31415000-31416600	Enhancers	Placenta	Placenta
4	chr22:31415200-31417200	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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