Variant report

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr22:31377617-31378396	MCF10A-Er-Src	breast:	n/a	n/a
2	SETDB1	chr22:31377492-31377975	U2OS	brain:	n/a	n/a
3	POLR2A	chr22:31377514-31377659	HUVEC	blood vessel:	n/a	n/a
4	POLR2A	chr22:31368958-31378923	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr22:31375006..31378537-chr22:31476924..31478681,3	MCF-7	breast:
2	chr22:31376348..31379301-chr22:31392662..31394474,2	MCF-7	breast:
3	chr22:31371236..31374508-chr22:31375496..31377845,5	K562	blood:
4	chr22:31371775..31374026-chr22:31375760..31377892,3	K562	blood:
5	chr22:31375745..31378647-chr22:31380130..31383422,4	K562	blood:
6	chr22:31376895..31378981-chr22:31476540..31479475,2	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2107402	0.88[JPT][hapmap]
rs7284438	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs7284757	1.00[YRI][hapmap]
rs9606799	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9609144	1.00[YRI][hapmap]
rs9609154	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9609155	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9609157	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9609160	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9609163	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9609189	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9609192	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9609197	0.93[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9896	chr22:31369204-31513933	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9609168	MORC2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs9609168	TUG1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31366800-31380800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr22:31373000-31381800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr22:31374400-31384000	Weak transcription	HSMMtube	muscle
4	chr22:31374600-31379200	Weak transcription	HSMM	muscle
5	chr22:31374800-31378000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr22:31376600-31379800	Weak transcription	HepG2	liver

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