Variant report

Variant	rs2286184
Chromosome Location	chr7:84630516-84630517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:84623761..84625708-chr7:84627565..84630528,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10499882	1.00[GIH][hapmap];0.95[JPT][hapmap]
rs12538302	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12673176	0.88[MEX][hapmap]
rs12707697	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1919287	0.85[JPT][hapmap]
rs34516090	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6962019	0.81[JPT][hapmap];0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2286184	CROT	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84626400-84639800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:84627000-84632200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:84627200-84632800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:84627200-84633800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:84627200-84633800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:84627200-84636800	Weak transcription	Fetal Stomach	stomach
7	chr7:84627400-84631600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:84627800-84633400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr7:84628000-84632000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:84628200-84630800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:84628200-84631200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr7:84628200-84631600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr7:84628800-84631400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr7:84629200-84631800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr7:84629200-84643000	Weak transcription	Fetal Muscle Leg	muscle
16	chr7:84629600-84631600	Enhancers	Brain Germinal Matrix	brain
17	chr7:84629600-84632200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr7:84629800-84630800	Enhancers	H9 Cell Line	embryonic stem cell
19	chr7:84629800-84631400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr7:84630000-84630600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:84630000-84630600	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr7:84630200-84630600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:84630200-84630600	Enhancers	Fetal Brain Male	brain
24	chr7:84630400-84630600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr7:84630400-84630600	Enhancers	Aorta	Aorta
26	chr7:84630400-84633400	Weak transcription	Fetal Lung	lung

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