Variant report

Variant	rs1919287
Chromosome Location	chr7:84511203-84511204
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:84508483..84511432-chr7:84516056..84517818,2	K562	blood:
2	chr7:84475070..84479016-chr7:84505987..84511663,5	K562	blood:
3	chr7:84508797..84511350-chr7:84512443..84514442,2	K562	blood:
4	chr7:84509660..84511459-chr7:84521685..84524574,2	K562	blood:
5	chr7:84453275..84455457-chr7:84508564..84511405,3	K562	blood:

Variant related genes	Relation type
ENSG00000235243	Chromatin interaction

Extended variants
information (count: 161 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:157)

rs_ID	r²[population]
rs10085515	1.00[CEU][hapmap];0.97[GIH][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs10224730	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10225306	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10226150	0.87[EUR][1000 genomes]
rs10227116	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10229754	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10232046	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10235869	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10239803	0.86[EUR][1000 genomes]
rs10240021	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10243996	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10246917	0.86[EUR][1000 genomes]
rs10249026	0.86[EUR][1000 genomes]
rs10256480	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10256889	0.83[AFR][1000 genomes]
rs10260931	0.86[EUR][1000 genomes]
rs10265300	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10267063	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10267189	0.83[AFR][1000 genomes]
rs10272662	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10274330	0.86[EUR][1000 genomes]
rs10277279	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10282482	0.80[AFR][1000 genomes]
rs1030539	0.85[EUR][1000 genomes]
rs1030540	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1030541	0.85[EUR][1000 genomes]
rs10499882	0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10954760	0.95[CEU][hapmap];0.91[GIH][hapmap];0.89[TSI][hapmap]
rs1118915	0.86[EUR][1000 genomes]
rs11761247	0.95[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.85[LWK][hapmap];0.88[MEX][hapmap];0.94[MKK][hapmap];0.91[TSI][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11764839	0.83[EUR][1000 genomes]
rs11765826	0.86[EUR][1000 genomes]
rs11976179	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11980701	0.86[EUR][1000 genomes]
rs11981981	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11984418	0.82[ASN][1000 genomes]
rs12154861	0.86[EUR][1000 genomes]
rs12155118	0.86[EUR][1000 genomes]
rs12672643	0.95[CEU][hapmap];0.91[GIH][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs12707673	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12707681	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12707682	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12707683	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12707684	0.86[EUR][1000 genomes]
rs13221551	0.86[EUR][1000 genomes]
rs13225076	0.86[EUR][1000 genomes]
rs13226061	0.83[EUR][1000 genomes]
rs13227983	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13235916	0.86[EUR][1000 genomes]
rs13239654	0.86[EUR][1000 genomes]
rs13240109	0.88[EUR][1000 genomes]
rs13243442	0.86[EUR][1000 genomes]
rs13243701	0.84[EUR][1000 genomes]
rs13244454	0.80[EUR][1000 genomes]
rs13247373	0.80[EUR][1000 genomes]
rs13340534	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1430593	0.90[EUR][1000 genomes]
rs1583135	0.84[EUR][1000 genomes]
rs1583136	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1583137	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1583142	0.86[EUR][1000 genomes]
rs1583144	0.86[EUR][1000 genomes]
rs1583145	0.82[EUR][1000 genomes]
rs1583147	0.84[EUR][1000 genomes]
rs1594388	0.85[EUR][1000 genomes]
rs1594390	0.86[EUR][1000 genomes]
rs1594392	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs1594393	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1599876	0.86[EUR][1000 genomes]
rs1599877	0.86[EUR][1000 genomes]
rs1599878	0.86[EUR][1000 genomes]
rs1609872	0.85[EUR][1000 genomes]
rs1609875	0.85[EUR][1000 genomes]
rs1609876	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1609877	0.86[EUR][1000 genomes]
rs1813781	0.88[EUR][1000 genomes]
rs1819081	0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1820960	0.86[EUR][1000 genomes]
rs1820961	0.86[EUR][1000 genomes]
rs1820962	0.86[EUR][1000 genomes]
rs1835403	0.83[EUR][1000 genomes]
rs1897151	0.85[EUR][1000 genomes]
rs1897152	0.81[EUR][1000 genomes]
rs1897155	0.86[EUR][1000 genomes]
rs1897158	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1919284	0.92[EUR][1000 genomes]
rs1919285	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1961063	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1963873	0.86[EUR][1000 genomes]
rs1965737	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1982016	0.82[EUR][1000 genomes]
rs1982020	0.86[EUR][1000 genomes]
rs1984778	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1988767	0.86[EUR][1000 genomes]
rs1997303	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2099203	0.83[EUR][1000 genomes]
rs2141416	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2195647	0.92[EUR][1000 genomes]
rs2195648	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2217453	0.90[EUR][1000 genomes]
rs2286184	0.85[JPT][hapmap]
rs28613865	0.85[EUR][1000 genomes]
rs28664611	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs28671173	0.86[EUR][1000 genomes]
rs34701264	0.84[EUR][1000 genomes]
rs34905624	0.83[EUR][1000 genomes]
rs35037906	0.89[EUR][1000 genomes]
rs35169726	0.83[EUR][1000 genomes]
rs35508218	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35715078	0.81[ASN][1000 genomes]
rs35992683	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3886737	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4301393	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4395839	0.95[CEU][hapmap];0.91[GIH][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs4401790	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4481537	0.88[EUR][1000 genomes]
rs4503051	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4518607	0.94[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.97[LWK][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4534087	0.89[EUR][1000 genomes]
rs4563833	1.00[CEU][hapmap];0.97[GIH][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs4728560	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58730623	0.86[EUR][1000 genomes]
rs62471868	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62474471	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62474473	0.86[EUR][1000 genomes]
rs62474474	0.86[EUR][1000 genomes]
rs62474475	0.86[EUR][1000 genomes]
rs62474492	0.86[EUR][1000 genomes]
rs6468002	0.86[EUR][1000 genomes]
rs6468003	0.86[EUR][1000 genomes]
rs6468004	0.86[EUR][1000 genomes]
rs6946368	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs705100	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs71560704	0.90[EUR][1000 genomes]
rs732793	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs732794	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs732795	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs733513	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs752660	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs752664	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7777318	0.88[EUR][1000 genomes]
rs7782136	0.86[EUR][1000 genomes]
rs7782980	0.86[EUR][1000 genomes]
rs7783653	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7787961	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7799648	1.00[CEU][hapmap];0.97[GIH][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes]
rs7801827	0.86[EUR][1000 genomes]
rs7803475	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7805691	0.86[EUR][1000 genomes]
rs7805723	0.85[EUR][1000 genomes]
rs782891	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs782902	0.86[EUR][1000 genomes]
rs919529	0.90[EUR][1000 genomes]
rs9642192	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9649072	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9649677	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs993219	1.00[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv831050	chr7:84355996-84527261	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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