Variant report

Variant	rs705100
Chromosome Location	chr7:84529917-84529918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:84528164..84531131-chr7:84559401..84561148,2	K562	blood:

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10085515	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10226150	0.96[ASN][1000 genomes]
rs10239803	0.87[ASN][1000 genomes]
rs10246917	0.87[ASN][1000 genomes]
rs10249026	0.89[ASN][1000 genomes]
rs10256480	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10260931	0.87[ASN][1000 genomes]
rs10267063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10274330	0.87[ASN][1000 genomes]
rs10277279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10282482	0.83[ASN][1000 genomes]
rs1030539	0.87[ASN][1000 genomes]
rs1030541	0.87[ASN][1000 genomes]
rs1118915	0.87[ASN][1000 genomes]
rs11764839	0.87[ASN][1000 genomes]
rs11765826	0.87[ASN][1000 genomes]
rs11766179	0.81[ASN][1000 genomes]
rs12154861	0.87[ASN][1000 genomes]
rs12155118	0.87[ASN][1000 genomes]
rs12672643	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12707690	0.97[EUR][1000 genomes]
rs13221551	0.87[ASN][1000 genomes]
rs13225076	0.87[ASN][1000 genomes]
rs13226061	0.87[ASN][1000 genomes]
rs13235916	0.87[ASN][1000 genomes]
rs13239654	0.87[ASN][1000 genomes]
rs13243442	0.89[ASN][1000 genomes]
rs13243701	0.89[ASN][1000 genomes]
rs13244454	0.89[ASN][1000 genomes]
rs1367365	0.91[EUR][1000 genomes]
rs1534572	0.81[ASN][1000 genomes]
rs1583135	0.87[ASN][1000 genomes]
rs1583142	0.87[ASN][1000 genomes]
rs1583144	0.87[ASN][1000 genomes]
rs1594388	0.87[ASN][1000 genomes]
rs1594390	0.90[ASN][1000 genomes]
rs1599876	0.87[ASN][1000 genomes]
rs1599877	0.85[ASN][1000 genomes]
rs1599878	0.87[ASN][1000 genomes]
rs1609872	0.87[ASN][1000 genomes]
rs1609875	0.87[ASN][1000 genomes]
rs1609877	0.87[ASN][1000 genomes]
rs1813781	0.95[ASN][1000 genomes]
rs1820960	0.87[ASN][1000 genomes]
rs1820961	0.87[ASN][1000 genomes]
rs1820962	0.87[ASN][1000 genomes]
rs1897151	0.87[ASN][1000 genomes]
rs1897152	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1897155	0.87[ASN][1000 genomes]
rs1897158	0.80[AFR][1000 genomes]
rs1919284	0.97[ASN][1000 genomes]
rs1919287	0.83[CEU][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1961063	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1963873	0.96[ASN][1000 genomes]
rs1982020	0.96[ASN][1000 genomes]
rs1988767	0.87[ASN][1000 genomes]
rs2103312	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs2195647	0.97[ASN][1000 genomes]
rs2195648	0.80[EUR][1000 genomes]
rs2217453	0.91[ASN][1000 genomes]
rs28613865	0.87[ASN][1000 genomes]
rs28664611	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28671173	0.87[ASN][1000 genomes]
rs34085748	0.85[ASN][1000 genomes]
rs35037906	0.96[ASN][1000 genomes]
rs3886737	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4301393	0.80[AFR][1000 genomes]
rs4395839	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4481537	0.96[ASN][1000 genomes]
rs4518607	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4534087	0.96[ASN][1000 genomes]
rs4563833	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs58730623	0.87[ASN][1000 genomes]
rs62472062	0.81[ASN][1000 genomes]
rs62474473	0.89[ASN][1000 genomes]
rs62474474	0.89[ASN][1000 genomes]
rs62474475	0.90[ASN][1000 genomes]
rs62474492	0.90[ASN][1000 genomes]
rs6468002	0.87[ASN][1000 genomes]
rs6468003	0.87[ASN][1000 genomes]
rs6468004	0.87[ASN][1000 genomes]
rs7777318	0.96[ASN][1000 genomes]
rs7782136	0.87[ASN][1000 genomes]
rs7782980	0.87[ASN][1000 genomes]
rs7799648	0.83[CEU][hapmap]
rs7801827	0.87[ASN][1000 genomes]
rs7805691	0.87[ASN][1000 genomes]
rs7805723	0.82[ASN][1000 genomes]
rs782891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs782892	0.93[EUR][1000 genomes]
rs782893	0.92[EUR][1000 genomes]
rs782895	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9642192	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9649071	0.91[EUR][1000 genomes]
rs9649072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9649678	0.97[EUR][1000 genomes]
rs993219	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9942642	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84523200-84533400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:84529600-84530000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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