Variant report

Variant	rs782895
Chromosome Location	chr7:84530326-84530327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:84528164..84531131-chr7:84559401..84561148,2	K562	blood:
2	chr7:84529973..84531867-chr7:84533645..84535945,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10085515	0.94[GIH][hapmap];0.89[MEX][hapmap]
rs10256480	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10267063	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10277279	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10954760	0.92[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap]
rs10954761	0.81[ASN][1000 genomes]
rs11767793	0.81[EUR][1000 genomes]
rs11980701	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12672643	0.87[GIH][hapmap];0.84[MEX][hapmap]
rs12707680	0.83[ASN][1000 genomes]
rs12707690	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13240109	0.97[ASN][1000 genomes]
rs1367365	0.93[EUR][1000 genomes]
rs1430593	0.97[ASN][1000 genomes]
rs1579511	0.83[ASN][1000 genomes]
rs1583145	0.88[ASN][1000 genomes]
rs1583147	0.97[ASN][1000 genomes]
rs1594392	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1819081	0.81[CEU][hapmap];0.91[GIH][hapmap]
rs1897152	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1919287	0.91[GIH][hapmap];0.82[TSI][hapmap]
rs1982016	0.88[ASN][1000 genomes]
rs28664611	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34701264	0.88[ASN][1000 genomes]
rs4395839	0.87[GIH][hapmap];0.84[MEX][hapmap]
rs4518607	0.94[GIH][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs4563833	0.94[GIH][hapmap];0.84[MEX][hapmap]
rs705100	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71560704	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7799648	1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs782891	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs782892	0.95[EUR][1000 genomes]
rs782893	0.93[EUR][1000 genomes]
rs810667	1.00[ASN][1000 genomes]
rs919529	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9649071	0.93[EUR][1000 genomes]
rs9649072	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9649678	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs782895	RUNDC3B	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84523200-84533400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links