Variant report

Variant	rs10256480
Chromosome Location	chr7:84527851-84527852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10085515	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10226150	0.97[ASN][1000 genomes]
rs10239803	0.88[ASN][1000 genomes]
rs10246917	0.88[ASN][1000 genomes]
rs10249026	0.89[ASN][1000 genomes]
rs10260931	0.88[ASN][1000 genomes]
rs10267063	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10274330	0.88[ASN][1000 genomes]
rs10277279	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10282482	0.81[ASN][1000 genomes]
rs1030539	0.88[ASN][1000 genomes]
rs1030541	0.88[ASN][1000 genomes]
rs1118915	0.88[ASN][1000 genomes]
rs11764839	0.88[ASN][1000 genomes]
rs11765826	0.88[ASN][1000 genomes]
rs12154861	0.88[ASN][1000 genomes]
rs12155118	0.88[ASN][1000 genomes]
rs12672643	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12707690	0.96[EUR][1000 genomes]
rs13221551	0.88[ASN][1000 genomes]
rs13225076	0.88[ASN][1000 genomes]
rs13226061	0.88[ASN][1000 genomes]
rs13235916	0.88[ASN][1000 genomes]
rs13239654	0.88[ASN][1000 genomes]
rs13243442	0.89[ASN][1000 genomes]
rs13243701	0.89[ASN][1000 genomes]
rs13244454	0.89[ASN][1000 genomes]
rs1367365	0.90[EUR][1000 genomes]
rs1583135	0.88[ASN][1000 genomes]
rs1583142	0.88[ASN][1000 genomes]
rs1583144	0.88[ASN][1000 genomes]
rs1594388	0.88[ASN][1000 genomes]
rs1594390	0.91[ASN][1000 genomes]
rs1599876	0.88[ASN][1000 genomes]
rs1599877	0.86[ASN][1000 genomes]
rs1599878	0.88[ASN][1000 genomes]
rs1609872	0.88[ASN][1000 genomes]
rs1609875	0.88[ASN][1000 genomes]
rs1609877	0.88[ASN][1000 genomes]
rs1813781	0.96[ASN][1000 genomes]
rs1820960	0.88[ASN][1000 genomes]
rs1820961	0.88[ASN][1000 genomes]
rs1820962	0.88[ASN][1000 genomes]
rs1897151	0.88[ASN][1000 genomes]
rs1897152	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1897155	0.88[ASN][1000 genomes]
rs1919284	0.98[ASN][1000 genomes]
rs1919287	0.83[CEU][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1961063	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1963873	0.97[ASN][1000 genomes]
rs1982020	0.97[ASN][1000 genomes]
rs1988767	0.88[ASN][1000 genomes]
rs2103312	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs2195647	0.98[ASN][1000 genomes]
rs2217453	0.92[ASN][1000 genomes]
rs28613865	0.88[ASN][1000 genomes]
rs28664611	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28671173	0.88[ASN][1000 genomes]
rs34085748	0.85[ASN][1000 genomes]
rs35037906	0.97[ASN][1000 genomes]
rs3886737	0.82[AFR][1000 genomes]
rs4395839	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4481537	0.97[ASN][1000 genomes]
rs4518607	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4534087	0.97[ASN][1000 genomes]
rs4563833	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs58730623	0.88[ASN][1000 genomes]
rs62474473	0.89[ASN][1000 genomes]
rs62474474	0.89[ASN][1000 genomes]
rs62474475	0.91[ASN][1000 genomes]
rs62474492	0.91[ASN][1000 genomes]
rs6468002	0.88[ASN][1000 genomes]
rs6468003	0.88[ASN][1000 genomes]
rs6468004	0.88[ASN][1000 genomes]
rs705100	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7777318	0.97[ASN][1000 genomes]
rs7782136	0.88[ASN][1000 genomes]
rs7782980	0.88[ASN][1000 genomes]
rs7799648	0.83[CEU][hapmap]
rs7801827	0.88[ASN][1000 genomes]
rs7805691	0.88[ASN][1000 genomes]
rs7805723	0.83[ASN][1000 genomes]
rs782891	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs782892	0.93[EUR][1000 genomes]
rs782893	0.91[EUR][1000 genomes]
rs782895	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9642192	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9649071	0.90[EUR][1000 genomes]
rs9649072	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9649678	0.97[EUR][1000 genomes]
rs993219	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84523200-84533400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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