Variant report

Variant	rs9649678
Chromosome Location	chr7:84527309-84527310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10085515	0.83[CEU][hapmap]
rs10256480	0.97[EUR][1000 genomes]
rs10267063	0.97[EUR][1000 genomes]
rs10277279	0.97[EUR][1000 genomes]
rs10954760	0.93[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs10954761	0.83[ASN][1000 genomes]
rs11767793	0.82[EUR][1000 genomes]
rs11980701	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12707680	0.86[ASN][1000 genomes]
rs12707690	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13240109	1.00[ASN][1000 genomes]
rs1367365	0.93[EUR][1000 genomes]
rs1430593	1.00[ASN][1000 genomes]
rs1579511	0.86[ASN][1000 genomes]
rs1583145	0.91[ASN][1000 genomes]
rs1583147	1.00[ASN][1000 genomes]
rs1594392	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1897152	0.97[EUR][1000 genomes]
rs1919287	0.83[CEU][hapmap]
rs1961063	0.83[CEU][hapmap]
rs1982016	0.91[ASN][1000 genomes]
rs28664611	0.97[EUR][1000 genomes]
rs34701264	0.91[ASN][1000 genomes]
rs4518607	0.83[CEU][hapmap]
rs4563833	0.83[CEU][hapmap]
rs705100	0.97[EUR][1000 genomes]
rs71560704	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7799648	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs782891	0.97[EUR][1000 genomes]
rs782892	0.96[EUR][1000 genomes]
rs782893	0.94[EUR][1000 genomes]
rs782895	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs810667	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs919529	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9642192	0.84[CEU][hapmap]
rs9649071	0.93[EUR][1000 genomes]
rs9649072	0.97[EUR][1000 genomes]
rs993219	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84523200-84533400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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