Variant report

Variant	rs782893
Chromosome Location	chr7:84532932-84532933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10247311	0.88[ASN][1000 genomes]
rs10256480	0.91[EUR][1000 genomes]
rs10261725	0.81[CHB][hapmap]
rs10267063	0.92[EUR][1000 genomes]
rs10277279	0.91[EUR][1000 genomes]
rs10277834	1.00[JPT][hapmap]
rs10486845	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs10486847	0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs11760335	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11767793	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12155210	0.90[ASN][1000 genomes]
rs12707690	0.95[EUR][1000 genomes]
rs13232789	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs13234489	1.00[JPT][hapmap]
rs13240751	1.00[JPT][hapmap]
rs1367365	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17558957	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17559084	1.00[ASW][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs17639600	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1835403	0.90[ASN][1000 genomes]
rs1897152	0.93[EUR][1000 genomes]
rs1982019	0.85[ASN][1000 genomes]
rs2099203	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs28664611	0.91[EUR][1000 genomes]
rs34905624	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs35169726	0.90[ASN][1000 genomes]
rs62472060	0.88[ASN][1000 genomes]
rs62472078	0.83[ASN][1000 genomes]
rs6965396	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs705100	0.92[EUR][1000 genomes]
rs7806400	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs7811476	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs782891	0.92[EUR][1000 genomes]
rs782892	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs782895	0.93[EUR][1000 genomes]
rs782902	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9649071	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9649072	0.91[EUR][1000 genomes]
rs9649678	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs782893	RUNDC3B	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84523200-84533400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links