Variant report

Variant	rs1897152
Chromosome Location	chr7:84541873-84541874
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10085515	0.96[ASN][1000 genomes]
rs10226150	0.96[ASN][1000 genomes]
rs10239803	0.87[ASN][1000 genomes]
rs10246917	0.87[ASN][1000 genomes]
rs10249026	0.89[ASN][1000 genomes]
rs10256480	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10260931	0.87[ASN][1000 genomes]
rs10267063	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10274330	0.87[ASN][1000 genomes]
rs10277279	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10282482	0.83[ASN][1000 genomes]
rs1030539	0.87[ASN][1000 genomes]
rs1030541	0.87[ASN][1000 genomes]
rs1118915	0.87[ASN][1000 genomes]
rs11764839	0.87[ASN][1000 genomes]
rs11765826	0.87[ASN][1000 genomes]
rs11766179	0.81[ASN][1000 genomes]
rs11767793	0.81[EUR][1000 genomes]
rs12154861	0.87[ASN][1000 genomes]
rs12155118	0.87[ASN][1000 genomes]
rs12672643	0.87[ASN][1000 genomes]
rs12707690	0.98[EUR][1000 genomes]
rs13221551	0.87[ASN][1000 genomes]
rs13225076	0.87[ASN][1000 genomes]
rs13226061	0.87[ASN][1000 genomes]
rs13235916	0.87[ASN][1000 genomes]
rs13239654	0.87[ASN][1000 genomes]
rs13243442	0.89[ASN][1000 genomes]
rs13243701	0.89[ASN][1000 genomes]
rs13244454	0.89[ASN][1000 genomes]
rs1367365	0.92[EUR][1000 genomes]
rs1534572	0.81[ASN][1000 genomes]
rs1583135	0.87[ASN][1000 genomes]
rs1583142	0.87[ASN][1000 genomes]
rs1583144	0.87[ASN][1000 genomes]
rs1594388	0.87[ASN][1000 genomes]
rs1594390	0.90[ASN][1000 genomes]
rs1599876	0.87[ASN][1000 genomes]
rs1599877	0.85[ASN][1000 genomes]
rs1599878	0.87[ASN][1000 genomes]
rs1609872	0.87[ASN][1000 genomes]
rs1609875	0.87[ASN][1000 genomes]
rs1609877	0.87[ASN][1000 genomes]
rs1813781	0.95[ASN][1000 genomes]
rs1820960	0.87[ASN][1000 genomes]
rs1820961	0.87[ASN][1000 genomes]
rs1820962	0.87[ASN][1000 genomes]
rs1897151	0.87[ASN][1000 genomes]
rs1897155	0.87[ASN][1000 genomes]
rs1919284	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1919287	0.81[EUR][1000 genomes]
rs1961063	0.96[ASN][1000 genomes]
rs1963873	0.96[ASN][1000 genomes]
rs1982020	0.96[ASN][1000 genomes]
rs1988767	0.87[ASN][1000 genomes]
rs2195647	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2217453	0.91[ASN][1000 genomes]
rs28613865	0.87[ASN][1000 genomes]
rs28664611	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28671173	0.87[ASN][1000 genomes]
rs34085748	0.85[ASN][1000 genomes]
rs35037906	0.96[ASN][1000 genomes]
rs4395839	0.87[ASN][1000 genomes]
rs4481537	0.96[ASN][1000 genomes]
rs4518607	0.96[ASN][1000 genomes]
rs4534087	0.96[ASN][1000 genomes]
rs4563833	0.96[ASN][1000 genomes]
rs58730623	0.87[ASN][1000 genomes]
rs62472062	0.81[ASN][1000 genomes]
rs62474473	0.89[ASN][1000 genomes]
rs62474474	0.89[ASN][1000 genomes]
rs62474475	0.90[ASN][1000 genomes]
rs62474492	0.90[ASN][1000 genomes]
rs6468002	0.87[ASN][1000 genomes]
rs6468003	0.87[ASN][1000 genomes]
rs6468004	0.87[ASN][1000 genomes]
rs705100	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7777318	0.96[ASN][1000 genomes]
rs7782136	0.87[ASN][1000 genomes]
rs7782980	0.87[ASN][1000 genomes]
rs7799648	0.80[EUR][1000 genomes]
rs7801827	0.87[ASN][1000 genomes]
rs7805691	0.87[ASN][1000 genomes]
rs7805723	0.82[ASN][1000 genomes]
rs782891	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs782892	0.95[EUR][1000 genomes]
rs782893	0.93[EUR][1000 genomes]
rs782895	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9642192	0.96[ASN][1000 genomes]
rs9649071	0.92[EUR][1000 genomes]
rs9649072	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9649678	0.97[EUR][1000 genomes]
rs993219	0.96[ASN][1000 genomes]
rs9942642	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84534400-84542600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:84536400-84542000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:84536400-84542600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:84537600-84542400	Weak transcription	NHLF	lung
5	chr7:84537800-84543000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:84538000-84542600	Weak transcription	Colon Smooth Muscle	Colon
7	chr7:84538400-84542400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:84538600-84542400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:84538800-84542800	Weak transcription	NH-A	brain
10	chr7:84539200-84542600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr7:84540400-84543000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr7:84540400-84544000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr7:84540600-84543400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr7:84540600-84544000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr7:84541000-84542400	Weak transcription	K562	blood
16	chr7:84541600-84543000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr7:84541800-84544000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr7:84541800-84544000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr7:84541800-84544200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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