Variant report

Variant	rs782902
Chromosome Location	chr7:84509435-84509436
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:84420135..84422964-chr7:84508124..84511065,2	K562	blood:
2	chr7:84500124..84502806-chr7:84508171..84509903,2	K562	blood:
3	chr7:84508483..84511432-chr7:84516056..84517818,2	K562	blood:
4	chr7:84475070..84479016-chr7:84505987..84511663,5	K562	blood:
5	chr7:84508797..84511350-chr7:84512443..84514442,2	K562	blood:
6	chr7:84503629..84506540-chr7:84507302..84509913,4	K562	blood:
7	chr7:84495091..84496755-chr7:84507869..84510103,2	K562	blood:
8	chr7:84453275..84455457-chr7:84508564..84511405,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000232605	Chromatin interaction
ENSG00000235243	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10085515	0.85[EUR][1000 genomes]
rs10226150	0.83[EUR][1000 genomes]
rs10247311	0.87[ASN][1000 genomes]
rs11762446	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11767793	0.95[ASN][1000 genomes]
rs11980701	0.85[EUR][1000 genomes]
rs12154270	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12154521	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12154737	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12155210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707674	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12707678	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13227976	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13232789	0.82[ASN][1000 genomes]
rs13240109	0.86[EUR][1000 genomes]
rs1367365	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430593	0.90[EUR][1000 genomes]
rs1583138	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1583143	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1583145	0.82[EUR][1000 genomes]
rs1583147	0.83[EUR][1000 genomes]
rs1594379	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1594392	0.83[EUR][1000 genomes]
rs1813781	0.84[EUR][1000 genomes]
rs1819081	0.85[EUR][1000 genomes]
rs1835403	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1897150	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1919284	0.88[EUR][1000 genomes]
rs1919285	0.83[EUR][1000 genomes]
rs1919287	0.86[EUR][1000 genomes]
rs1961063	0.84[EUR][1000 genomes]
rs1963873	0.81[EUR][1000 genomes]
rs1982016	0.81[EUR][1000 genomes]
rs1982019	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1982020	0.81[EUR][1000 genomes]
rs2099203	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2141416	0.83[EUR][1000 genomes]
rs2195647	0.88[EUR][1000 genomes]
rs2195648	0.85[EUR][1000 genomes]
rs2217453	0.84[EUR][1000 genomes]
rs34125587	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34701264	0.80[EUR][1000 genomes]
rs34905624	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35037906	0.85[EUR][1000 genomes]
rs35169726	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35433276	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35441516	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3886737	0.85[EUR][1000 genomes]
rs4072421	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4301393	0.81[EUR][1000 genomes]
rs4481537	0.84[EUR][1000 genomes]
rs4518607	0.83[EUR][1000 genomes]
rs4534087	0.85[EUR][1000 genomes]
rs4563833	0.84[EUR][1000 genomes]
rs56757295	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62471946	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62472060	0.87[ASN][1000 genomes]
rs62472078	0.82[ASN][1000 genomes]
rs71560704	0.89[EUR][1000 genomes]
rs7458032	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7777318	0.84[EUR][1000 genomes]
rs7799648	0.91[EUR][1000 genomes]
rs7811476	0.85[ASN][1000 genomes]
rs782892	0.90[ASN][1000 genomes]
rs782893	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs919529	0.89[EUR][1000 genomes]
rs9642192	0.84[EUR][1000 genomes]
rs9649071	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs993219	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv831050	chr7:84355996-84527261	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84507800-84510600	Active TSS	K562	blood
2	chr7:84508400-84511200	Weak transcription	Right Atrium	heart
3	chr7:84508800-84509800	Enhancers	Fetal Brain Male	brain
4	chr7:84509400-84510400	Active TSS	Placenta	Placenta

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