Variant report

Variant	rs12154521
Chromosome Location	chr7:84342763-84342764
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 137 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10085515	0.84[CEU][hapmap]
rs10230448	0.80[AMR][1000 genomes]
rs10232046	0.86[EUR][1000 genomes]
rs10235869	0.87[EUR][1000 genomes]
rs10239803	0.81[EUR][1000 genomes]
rs10243996	0.84[EUR][1000 genomes]
rs10246917	0.81[EUR][1000 genomes]
rs10249026	0.81[EUR][1000 genomes]
rs10252306	0.80[AMR][1000 genomes]
rs10260931	0.81[EUR][1000 genomes]
rs10265300	0.87[EUR][1000 genomes]
rs10274330	0.81[EUR][1000 genomes]
rs1030539	0.81[EUR][1000 genomes]
rs1030541	0.81[EUR][1000 genomes]
rs10954760	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs10954761	0.89[EUR][1000 genomes]
rs1118915	0.81[EUR][1000 genomes]
rs11761247	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs11762446	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11765826	0.81[EUR][1000 genomes]
rs11976179	0.87[EUR][1000 genomes]
rs11979404	1.00[ASN][1000 genomes]
rs11980701	0.81[EUR][1000 genomes]
rs11981981	0.83[EUR][1000 genomes]
rs11983702	0.91[EUR][1000 genomes]
rs12154270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154737	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12154861	0.81[EUR][1000 genomes]
rs12155118	0.81[EUR][1000 genomes]
rs12155210	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12672643	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs12707673	0.86[EUR][1000 genomes]
rs12707674	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12707676	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12707677	0.88[EUR][1000 genomes]
rs12707678	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12707680	0.86[EUR][1000 genomes]
rs12707684	0.80[EUR][1000 genomes]
rs13221551	0.81[EUR][1000 genomes]
rs13225076	0.81[EUR][1000 genomes]
rs13227976	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13235916	0.81[EUR][1000 genomes]
rs13239654	0.81[EUR][1000 genomes]
rs13240109	0.81[EUR][1000 genomes]
rs13243442	0.81[EUR][1000 genomes]
rs13247373	0.87[EUR][1000 genomes]
rs13340534	0.81[EUR][1000 genomes]
rs1579511	0.87[EUR][1000 genomes]
rs1583135	0.80[EUR][1000 genomes]
rs1583138	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1583142	0.81[EUR][1000 genomes]
rs1583143	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1583144	0.81[EUR][1000 genomes]
rs1583145	0.83[EUR][1000 genomes]
rs1583147	0.84[EUR][1000 genomes]
rs1594379	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1594388	0.82[EUR][1000 genomes]
rs1594390	0.81[EUR][1000 genomes]
rs1594392	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs1599876	0.81[EUR][1000 genomes]
rs1599877	0.81[EUR][1000 genomes]
rs1599878	0.81[EUR][1000 genomes]
rs1609872	0.81[EUR][1000 genomes]
rs1609875	0.81[EUR][1000 genomes]
rs1609877	0.81[EUR][1000 genomes]
rs1820960	0.81[EUR][1000 genomes]
rs1820961	0.81[EUR][1000 genomes]
rs1820962	0.81[EUR][1000 genomes]
rs1835403	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1897150	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1897151	0.81[EUR][1000 genomes]
rs1897155	0.81[EUR][1000 genomes]
rs1919287	0.84[CEU][hapmap]
rs1961063	0.84[CEU][hapmap]
rs1965737	0.84[EUR][1000 genomes]
rs1982016	0.83[EUR][1000 genomes]
rs1982019	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1982020	0.83[EUR][1000 genomes]
rs1984778	0.82[EUR][1000 genomes]
rs1988767	0.81[EUR][1000 genomes]
rs2099203	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28613865	0.81[EUR][1000 genomes]
rs28671173	0.81[EUR][1000 genomes]
rs34125587	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34701264	0.83[EUR][1000 genomes]
rs34829637	0.90[EUR][1000 genomes]
rs34905624	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35169726	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35433276	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35441516	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4072421	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4395839	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs4401790	0.82[EUR][1000 genomes]
rs4503051	0.87[EUR][1000 genomes]
rs4518607	0.84[CEU][hapmap]
rs4563833	0.84[CEU][hapmap]
rs4728560	0.87[EUR][1000 genomes]
rs56757295	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58730623	0.81[EUR][1000 genomes]
rs62471868	0.87[EUR][1000 genomes]
rs62471946	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62474473	0.81[EUR][1000 genomes]
rs62474474	0.81[EUR][1000 genomes]
rs62474475	0.81[EUR][1000 genomes]
rs62474492	0.81[EUR][1000 genomes]
rs6468002	0.81[EUR][1000 genomes]
rs6468003	0.81[EUR][1000 genomes]
rs6468004	0.81[EUR][1000 genomes]
rs7458032	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7782136	0.81[EUR][1000 genomes]
rs7782980	0.81[EUR][1000 genomes]
rs7783653	0.87[EUR][1000 genomes]
rs7787947	0.93[EUR][1000 genomes]
rs7787961	0.86[EUR][1000 genomes]
rs7799648	0.84[CEU][hapmap]
rs7801827	0.81[EUR][1000 genomes]
rs7805691	0.81[EUR][1000 genomes]
rs7805723	0.81[EUR][1000 genomes]
rs782902	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9642192	0.87[CEU][hapmap]
rs993219	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv888635	chr7:84086502-84344258	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1031149	chr7:84144990-84404356	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv888639	chr7:84158180-84344258	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv888641	chr7:84168615-84453100	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1031328	chr7:84182356-84377593	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1016221	chr7:84183142-84377593	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv521668	chr7:84186159-84346026	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv888643	chr7:84196258-84453100	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1019814	chr7:84208284-84369045	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	esv2762684	chr7:84218035-84444871	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv831047	chr7:84231938-84408081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv888644	chr7:84253690-84386060	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv831049	chr7:84277599-84475710	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84342600-84348800	Weak transcription	Hela-S3	cervix

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