Variant report

Variant	rs13340534
Chromosome Location	chr7:84428617-84428618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:84426900..84429859-chr7:84431258..84433369,2	K562	blood:

Extended variants
information (count: 177 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:169)

rs_ID	r²[population]
rs10085515	0.86[EUR][1000 genomes]
rs10224730	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10225306	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10227116	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10229754	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10232046	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10235869	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10239803	0.92[EUR][1000 genomes]
rs10240021	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10243996	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10246917	0.92[EUR][1000 genomes]
rs10249026	0.92[EUR][1000 genomes]
rs10260931	0.92[EUR][1000 genomes]
rs10265300	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10272662	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10274330	0.91[EUR][1000 genomes]
rs1030539	0.91[EUR][1000 genomes]
rs1030540	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1030541	0.91[EUR][1000 genomes]
rs10954760	0.89[EUR][1000 genomes]
rs10954761	0.91[EUR][1000 genomes]
rs1118915	0.92[EUR][1000 genomes]
rs11761247	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11762446	0.81[EUR][1000 genomes]
rs11764839	0.89[EUR][1000 genomes]
rs11765826	0.92[EUR][1000 genomes]
rs11976179	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11980701	0.85[EUR][1000 genomes]
rs11981981	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11983702	0.87[EUR][1000 genomes]
rs12154270	0.81[EUR][1000 genomes]
rs12154521	0.81[EUR][1000 genomes]
rs12154737	0.81[EUR][1000 genomes]
rs12154861	0.92[EUR][1000 genomes]
rs12155118	0.92[EUR][1000 genomes]
rs12672643	0.92[EUR][1000 genomes]
rs12707673	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12707674	0.81[EUR][1000 genomes]
rs12707677	0.89[EUR][1000 genomes]
rs12707678	0.83[EUR][1000 genomes]
rs12707680	0.94[EUR][1000 genomes]
rs12707681	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12707682	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12707683	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12707684	0.92[EUR][1000 genomes]
rs13221551	0.92[EUR][1000 genomes]
rs13225076	0.92[EUR][1000 genomes]
rs13226061	0.89[EUR][1000 genomes]
rs13227976	0.87[EUR][1000 genomes]
rs13227983	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13235916	0.92[EUR][1000 genomes]
rs13239654	0.92[EUR][1000 genomes]
rs13240109	0.85[EUR][1000 genomes]
rs13243442	0.92[EUR][1000 genomes]
rs13243701	0.90[EUR][1000 genomes]
rs13244454	0.87[EUR][1000 genomes]
rs13247373	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1430593	0.81[EUR][1000 genomes]
rs1579511	0.94[EUR][1000 genomes]
rs1583135	0.91[EUR][1000 genomes]
rs1583136	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1583137	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1583138	0.82[EUR][1000 genomes]
rs1583142	0.92[EUR][1000 genomes]
rs1583143	0.83[EUR][1000 genomes]
rs1583144	0.92[EUR][1000 genomes]
rs1583145	0.89[EUR][1000 genomes]
rs1583147	0.88[EUR][1000 genomes]
rs1594379	0.87[EUR][1000 genomes]
rs1594388	0.91[EUR][1000 genomes]
rs1594390	0.92[EUR][1000 genomes]
rs1594392	0.88[EUR][1000 genomes]
rs1594393	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1599876	0.92[EUR][1000 genomes]
rs1599877	0.92[EUR][1000 genomes]
rs1599878	0.92[EUR][1000 genomes]
rs1609872	0.91[EUR][1000 genomes]
rs1609875	0.91[EUR][1000 genomes]
rs1609876	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1609877	0.92[EUR][1000 genomes]
rs1813781	0.86[EUR][1000 genomes]
rs1819081	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1820960	0.92[EUR][1000 genomes]
rs1820961	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1820962	0.92[EUR][1000 genomes]
rs1897150	0.86[EUR][1000 genomes]
rs1897151	0.91[EUR][1000 genomes]
rs1897155	0.92[EUR][1000 genomes]
rs1897158	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1919284	0.83[EUR][1000 genomes]
rs1919285	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1919287	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1961063	0.86[EUR][1000 genomes]
rs1963873	0.85[EUR][1000 genomes]
rs1965737	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1982016	0.88[EUR][1000 genomes]
rs1982019	0.82[EUR][1000 genomes]
rs1982020	0.89[EUR][1000 genomes]
rs1984778	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1988767	0.92[EUR][1000 genomes]
rs2141416	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2195647	0.83[EUR][1000 genomes]
rs2195648	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2217453	0.81[EUR][1000 genomes]
rs28613865	0.91[EUR][1000 genomes]
rs28671173	0.92[EUR][1000 genomes]
rs34085748	0.85[EUR][1000 genomes]
rs34107456	0.82[ASN][1000 genomes]
rs34125587	0.82[EUR][1000 genomes]
rs34701264	0.91[EUR][1000 genomes]
rs34829637	0.86[EUR][1000 genomes]
rs35037906	0.86[EUR][1000 genomes]
rs35433276	0.83[EUR][1000 genomes]
rs35508218	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35812203	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs35992683	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3886737	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3924501	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4072421	0.81[EUR][1000 genomes]
rs4278108	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4301393	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4329228	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4342539	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4395839	0.92[EUR][1000 genomes]
rs4401790	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4481536	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4481537	0.86[EUR][1000 genomes]
rs4503051	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4518607	0.88[EUR][1000 genomes]
rs4534087	0.86[EUR][1000 genomes]
rs4563833	0.86[EUR][1000 genomes]
rs4728560	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4732577	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs56757295	0.81[EUR][1000 genomes]
rs58730623	0.92[EUR][1000 genomes]
rs62471868	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62471946	0.81[EUR][1000 genomes]
rs62474471	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62474473	0.92[EUR][1000 genomes]
rs62474474	0.92[EUR][1000 genomes]
rs62474475	0.92[EUR][1000 genomes]
rs62474492	0.92[EUR][1000 genomes]
rs6468002	0.92[EUR][1000 genomes]
rs6468003	0.92[EUR][1000 genomes]
rs6468004	0.92[EUR][1000 genomes]
rs6946368	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71560704	0.82[EUR][1000 genomes]
rs732793	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs732794	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs732795	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs733513	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7458032	0.81[EUR][1000 genomes]
rs7458400	0.85[ASN][1000 genomes]
rs752660	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs752664	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7777318	0.85[EUR][1000 genomes]
rs7782136	0.92[EUR][1000 genomes]
rs7782980	0.92[EUR][1000 genomes]
rs7783653	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7787947	0.87[EUR][1000 genomes]
rs7787961	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7801827	0.92[EUR][1000 genomes]
rs7803475	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7805691	0.92[EUR][1000 genomes]
rs7805723	0.94[EUR][1000 genomes]
rs919529	0.82[EUR][1000 genomes]
rs9642192	0.86[EUR][1000 genomes]
rs9649677	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs993219	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv888641	chr7:84168615-84453100	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv888643	chr7:84196258-84453100	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2762684	chr7:84218035-84444871	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv831049	chr7:84277599-84475710	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv831050	chr7:84355996-84527261	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84418800-84440400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:84428200-84429000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:84428200-84429200	Enhancers	Fetal Intestine Small	intestine
4	chr7:84428200-84429400	Enhancers	Fetal Heart	heart
5	chr7:84428200-84429400	Enhancers	Fetal Intestine Large	intestine
6	chr7:84428400-84428800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:84428400-84428800	Active TSS	Right Atrium	heart
8	chr7:84428400-84429000	Active TSS	Adipose Nuclei	Adipose
9	chr7:84428400-84429200	Enhancers	Aorta	Aorta
10	chr7:84428400-84429400	Enhancers	NHEK	skin
11	chr7:84428600-84428800	ZNF genes & repeats	K562	blood
12	chr7:84428600-84429000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr7:84428600-84429200	Enhancers	Duodenum Mucosa	Duodenum
14	chr7:84428600-84430000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links