The 2.0 version of rSNPBase

Variant report

Variant rs2287684
Chromosome Location chr5:115822384-115822385
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115783600-115829600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr5:115791600-115838000 Weak transcription Right Ventricle heart
3 chr5:115796000-115833400 Strong transcription HUES64 Cell Line embryonic stem cell
4 chr5:115797000-115834800 Strong transcription H1 Cell Line embryonic stem cell
5 chr5:115797000-115838400 Strong transcription Placenta Placenta
6 chr5:115797400-115833800 Strong transcription iPS-18 Cell Line embryonic stem cell
7 chr5:115797600-115834600 Strong transcription H9 Cell Line embryonic stem cell
8 chr5:115797800-115834800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
9 chr5:115798000-115833200 Strong transcription HUES48 Cell Line embryonic stem cell
10 chr5:115798000-115834600 Strong transcription iPS-20b Cell Line embryonic stem cell
11 chr5:115799000-115830400 Strong transcription HUES6 Cell Line embryonic stem cell
12 chr5:115799400-115832000 Strong transcription Fetal Muscle Trunk muscle
13 chr5:115801400-115824000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
14 chr5:115801400-115825000 Weak transcription Psoas Muscle Psoas
15 chr5:115803400-115833200 Strong transcription iPS-15b Cell Line embryonic stem cell
16 chr5:115804600-115822600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr5:115813200-115824400 Strong transcription ES-I3 Cell Line embryonic stem cell
18 chr5:115813200-115826200 Weak transcription Skeletal Muscle Female skeletal muscle
19 chr5:115813400-115822400 Strong transcription Fetal Intestine Large intestine
20 chr5:115813600-115826800 Strong transcription Fetal Muscle Leg muscle
21 chr5:115813600-115831800 Strong transcription Fetal Stomach stomach
22 chr5:115813600-115832000 Strong transcription Fetal Adrenal Gland Adrenal Gland
23 chr5:115813800-115822600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
24 chr5:115813800-115827200 Weak transcription Primary T cells from cord blood blood
25 chr5:115813800-115830600 Weak transcription HepG2 liver
26 chr5:115813800-115833600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr5:115813800-115851000 Weak transcription Liver Liver
28 chr5:115814000-115826800 Weak transcription Skeletal Muscle Male skeletal muscle
29 chr5:115814000-115830200 Weak transcription Esophagus oesophagus
30 chr5:115814000-115850200 Weak transcription Small Intestine intestine
31 chr5:115814800-115823800 Weak transcription Colon Smooth Muscle Colon
32 chr5:115814800-115827800 Weak transcription Fetal Heart heart
33 chr5:115815800-115822400 Strong transcription Fetal Intestine Small intestine
34 chr5:115816000-115830400 Weak transcription Lung lung
35 chr5:115816000-115838400 Weak transcription Spleen Spleen
36 chr5:115816200-115827000 Weak transcription Breast Myoepithelial Primary Cells Breast
37 chr5:115816400-115822400 Weak transcription Primary hematopoietic stem cells blood
38 chr5:115816400-115830000 Weak transcription Rectal Smooth Muscle rectum
39 chr5:115816400-115830400 Weak transcription Primary B cells from cord blood blood
40 chr5:115816800-115827200 Weak transcription Brain Angular Gyrus brain
41 chr5:115816800-115840000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
42 chr5:115817000-115826600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
43 chr5:115817400-115822400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr5:115817400-115822800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr5:115817600-115828000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr5:115817600-115829600 Weak transcription Pancreas Pancrea
47 chr5:115818000-115822400 Weak transcription Left Ventricle heart
48 chr5:115818200-115826000 Strong transcription ES-WA7 Cell Line embryonic stem cell
49 chr5:115818200-115827400 Weak transcription Brain Anterior Caudate brain
50 chr5:115818400-115824200 Weak transcription Brain Germinal Matrix brain

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Last update: Aug 31, 2015