Variant report

Variant	rs2287685
Chromosome Location	chr5:115822923-115822924
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10077506	0.89[CEU][hapmap]
rs10077720	0.89[CEU][hapmap]
rs10078884	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11956022	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12186896	0.94[JPT][hapmap]
rs154599	0.84[JPT][hapmap]
rs154600	0.89[JPT][hapmap]
rs17139820	0.80[CHD][hapmap]
rs17139825	0.89[CEU][hapmap]
rs17139898	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17139903	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17139927	0.88[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs2059874	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2161227	0.88[CEU][hapmap];0.80[GIH][hapmap];0.84[JPT][hapmap];0.84[TSI][hapmap];0.90[EUR][1000 genomes]
rs2278263	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2278265	0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs258012	0.81[ASN][1000 genomes]
rs9885339	0.84[JPT][hapmap]
rs9885340	0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115783600-115829600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:115791600-115838000	Weak transcription	Right Ventricle	heart
3	chr5:115796000-115833400	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:115797000-115834800	Strong transcription	H1 Cell Line	embryonic stem cell
5	chr5:115797000-115838400	Strong transcription	Placenta	Placenta
6	chr5:115797400-115833800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:115797600-115834600	Strong transcription	H9 Cell Line	embryonic stem cell
8	chr5:115797800-115834800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:115798000-115833200	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:115798000-115834600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr5:115799000-115830400	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr5:115799400-115832000	Strong transcription	Fetal Muscle Trunk	muscle
13	chr5:115801400-115824000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:115801400-115825000	Weak transcription	Psoas Muscle	Psoas
15	chr5:115803400-115833200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
16	chr5:115813200-115824400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
17	chr5:115813200-115826200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr5:115813600-115826800	Strong transcription	Fetal Muscle Leg	muscle
19	chr5:115813600-115831800	Strong transcription	Fetal Stomach	stomach
20	chr5:115813600-115832000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr5:115813800-115827200	Weak transcription	Primary T cells from cord blood	blood
22	chr5:115813800-115830600	Weak transcription	HepG2	liver
23	chr5:115813800-115833600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr5:115813800-115851000	Weak transcription	Liver	Liver
25	chr5:115814000-115826800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr5:115814000-115830200	Weak transcription	Esophagus	oesophagus
27	chr5:115814000-115850200	Weak transcription	Small Intestine	intestine
28	chr5:115814800-115823800	Weak transcription	Colon Smooth Muscle	Colon
29	chr5:115814800-115827800	Weak transcription	Fetal Heart	heart
30	chr5:115816000-115830400	Weak transcription	Lung	lung
31	chr5:115816000-115838400	Weak transcription	Spleen	Spleen
32	chr5:115816200-115827000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr5:115816400-115830000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr5:115816400-115830400	Weak transcription	Primary B cells from cord blood	blood
35	chr5:115816800-115827200	Weak transcription	Brain Angular Gyrus	brain
36	chr5:115816800-115840000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr5:115817000-115826600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr5:115817600-115828000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:115817600-115829600	Weak transcription	Pancreas	Pancrea
40	chr5:115818200-115826000	Strong transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr5:115818200-115827400	Weak transcription	Brain Anterior Caudate	brain
42	chr5:115818400-115824200	Weak transcription	Brain Germinal Matrix	brain
43	chr5:115818400-115827200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr5:115818400-115827200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr5:115818600-115830000	Weak transcription	Colonic Mucosa	Colon
46	chr5:115818600-115833200	Weak transcription	Fetal Brain Male	brain
47	chr5:115818800-115823600	Weak transcription	HMEC	breast
48	chr5:115818800-115823600	Weak transcription	NHEK	skin
49	chr5:115820000-115824000	Strong transcription	Ovary	ovary
50	chr5:115820000-115825200	Strong transcription	Fetal Lung	lung

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