Variant report

Variant	rs10077720
Chromosome Location	chr5:115800559-115800560
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115794809..115796777-chr5:115799899..115802150,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10077506	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154599	0.82[CHD][hapmap]
rs17139805	0.93[CHB][hapmap];0.96[CHD][hapmap];0.81[ASN][1000 genomes]
rs17139820	0.81[JPT][hapmap]
rs17139825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17139898	0.89[CEU][hapmap]
rs2161227	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap]
rs2287685	0.89[CEU][hapmap]
rs2288475	1.00[GIH][hapmap]
rs2303752	0.93[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3733725	0.93[CHB][hapmap];0.89[CHD][hapmap];0.84[ASN][1000 genomes]
rs6861198	0.82[YRI][hapmap]
rs6861354	0.82[ASN][1000 genomes]
rs6861511	0.86[CHB][hapmap];0.89[CHD][hapmap];0.82[ASN][1000 genomes]
rs728529	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9885339	0.83[CHD][hapmap]
rs9885352	1.00[GIH][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10077720	RBM33	trans	lymphoblastoid	RTeQTL

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115774600-115811000	Weak transcription	Small Intestine	intestine
2	chr5:115783600-115802200	Weak transcription	Colonic Mucosa	Colon
3	chr5:115783600-115802200	Weak transcription	Pancreas	Pancrea
4	chr5:115783600-115803400	Weak transcription	Esophagus	oesophagus
5	chr5:115783600-115813000	Weak transcription	Spleen	Spleen
6	chr5:115783600-115813200	Weak transcription	Gastric	stomach
7	chr5:115783600-115829600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:115783800-115803200	Weak transcription	Liver	Liver
9	chr5:115788000-115813200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:115789600-115812600	Strong transcription	Fetal Intestine Large	intestine
11	chr5:115789800-115803200	Weak transcription	Lung	lung
12	chr5:115790400-115803200	Weak transcription	Aorta	Aorta
13	chr5:115790400-115812400	Weak transcription	HepG2	liver
14	chr5:115790800-115802800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:115791000-115801600	Weak transcription	Fetal Thymus	thymus
16	chr5:115791000-115802200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:115791000-115802200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr5:115791000-115802800	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr5:115791000-115804000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr5:115791000-115812400	Weak transcription	Fetal Brain Male	brain
21	chr5:115791000-115812600	Weak transcription	Ovary	ovary
22	chr5:115791400-115802200	Weak transcription	Primary T cells from cord blood	blood
23	chr5:115791400-115805400	Weak transcription	HSMMtube	muscle
24	chr5:115791600-115809600	Weak transcription	Right Atrium	heart
25	chr5:115791600-115838000	Weak transcription	Right Ventricle	heart
26	chr5:115792000-115805200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr5:115792000-115809200	Weak transcription	Colon Smooth Muscle	Colon
28	chr5:115792600-115801200	Weak transcription	Fetal Lung	lung
29	chr5:115792800-115802600	Weak transcription	Fetal Kidney	kidney
30	chr5:115792800-115812600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr5:115796000-115833400	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr5:115796600-115804400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr5:115797000-115834800	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr5:115797000-115838400	Strong transcription	Placenta	Placenta
35	chr5:115797400-115802200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr5:115797400-115833800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr5:115797600-115802400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr5:115797600-115803400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:115797600-115834600	Strong transcription	H9 Cell Line	embryonic stem cell
40	chr5:115797800-115800600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr5:115797800-115801200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
42	chr5:115797800-115802800	Strong transcription	Fetal Muscle Leg	muscle
43	chr5:115797800-115834800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr5:115798000-115833200	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr5:115798000-115834600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr5:115798600-115801200	Enhancers	Brain Hippocampus Middle	brain
47	chr5:115798600-115802200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr5:115798600-115803000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr5:115798600-115803200	Enhancers	Brain Angular Gyrus	brain
50	chr5:115799000-115830400	Strong transcription	HUES6 Cell Line	embryonic stem cell

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