Variant report

Variant	rs3733725
Chromosome Location	chr5:115791669-115791670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10077506	0.93[CHB][hapmap];0.89[CHD][hapmap];0.84[ASN][1000 genomes]
rs10077720	0.93[CHB][hapmap];0.89[CHD][hapmap];0.84[ASN][1000 genomes]
rs12186896	0.88[JPT][hapmap]
rs12522475	0.80[AMR][1000 genomes]
rs154599	0.94[JPT][hapmap]
rs154600	0.89[JPT][hapmap]
rs17139805	0.87[CHB][hapmap];0.89[CHD][hapmap];0.81[ASN][1000 genomes]
rs17139825	0.93[CHB][hapmap];0.92[ASN][1000 genomes]
rs2161227	0.81[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap]
rs2303752	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[ASN][1000 genomes]
rs6861354	0.97[ASN][1000 genomes]
rs6861511	0.93[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs728529	0.93[CHB][hapmap];0.89[CHD][hapmap];0.88[ASN][1000 genomes]
rs73781084	0.82[EUR][1000 genomes]
rs9885339	0.94[JPT][hapmap]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115774600-115811000	Weak transcription	Small Intestine	intestine
2	chr5:115782200-115798200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:115783600-115802200	Weak transcription	Colonic Mucosa	Colon
4	chr5:115783600-115802200	Weak transcription	Pancreas	Pancrea
5	chr5:115783600-115803400	Weak transcription	Esophagus	oesophagus
6	chr5:115783600-115813000	Weak transcription	Spleen	Spleen
7	chr5:115783600-115813200	Weak transcription	Gastric	stomach
8	chr5:115783600-115829600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:115783800-115803200	Weak transcription	Liver	Liver
10	chr5:115784200-115796800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:115784200-115800000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:115785200-115800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:115788000-115813200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:115788400-115791800	Enhancers	Fetal Stomach	stomach
15	chr5:115788400-115792000	Genic enhancers	HUES64 Cell Line	embryonic stem cell
16	chr5:115788600-115793800	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:115789000-115793800	Strong transcription	H9 Cell Line	embryonic stem cell
18	chr5:115789000-115795600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr5:115789000-115797400	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr5:115789000-115800200	Weak transcription	Psoas Muscle	Psoas
21	chr5:115789200-115791800	Genic enhancers	Cortex derived primary cultured neurospheres	brain
22	chr5:115789200-115796000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr5:115789400-115795200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr5:115789600-115792000	Enhancers	Primary hematopoietic stem cells	blood
25	chr5:115789600-115792400	Enhancers	Rectal Smooth Muscle	rectum
26	chr5:115789600-115795400	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr5:115789600-115812600	Strong transcription	Fetal Intestine Large	intestine
28	chr5:115789800-115803200	Weak transcription	Lung	lung
29	chr5:115790000-115796800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:115790000-115800200	Weak transcription	Fetal Intestine Small	intestine
31	chr5:115790200-115795600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr5:115790400-115791800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr5:115790400-115792200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr5:115790400-115803200	Weak transcription	Aorta	Aorta
35	chr5:115790400-115812400	Weak transcription	HepG2	liver
36	chr5:115790600-115791800	Enhancers	Brain Anterior Caudate	brain
37	chr5:115790600-115792000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr5:115790600-115792000	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr5:115790600-115792200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr5:115790600-115792400	Enhancers	Brain Substantia Nigra	brain
41	chr5:115790600-115795800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr5:115790600-115800000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr5:115790800-115791800	Enhancers	Fetal Heart	heart
44	chr5:115790800-115791800	Enhancers	Stomach Smooth Muscle	stomach
45	chr5:115790800-115792000	Enhancers	Colon Smooth Muscle	Colon
46	chr5:115790800-115792200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr5:115790800-115792200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr5:115790800-115792600	Weak transcription	Primary B cells from peripheral blood	blood
49	chr5:115790800-115792600	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr5:115790800-115798600	Weak transcription	Brain Angular Gyrus	brain

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