Variant report

Variant	rs6861511
Chromosome Location	chr5:115785916-115785917
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10077506	0.86[CHB][hapmap];0.89[CHD][hapmap];0.82[ASN][1000 genomes]
rs10077720	0.86[CHB][hapmap];0.89[CHD][hapmap];0.82[ASN][1000 genomes]
rs12186896	0.83[JPT][hapmap]
rs154599	0.88[JPT][hapmap]
rs154600	0.83[JPT][hapmap]
rs17139805	0.93[CHB][hapmap];0.93[CHD][hapmap];0.85[ASN][1000 genomes]
rs17139820	0.90[CEU][hapmap]
rs17139825	0.86[CHB][hapmap];0.89[ASN][1000 genomes]
rs2161227	0.88[JPT][hapmap]
rs2303752	0.93[CHB][hapmap];0.96[CHD][hapmap];0.89[ASN][1000 genomes]
rs3733725	0.93[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs6861354	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728529	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[ASN][1000 genomes]
rs9885339	0.88[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6861511	MCC	cis	parietal	SCAN

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115774600-115811000	Weak transcription	Small Intestine	intestine
2	chr5:115776600-115786600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:115778000-115790000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr5:115778200-115787600	Weak transcription	HMEC	breast
5	chr5:115778200-115787800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:115778400-115788800	Weak transcription	HSMMtube	muscle
7	chr5:115779000-115788600	Weak transcription	Fetal Heart	heart
8	chr5:115779000-115789800	Strong transcription	Placenta	Placenta
9	chr5:115779200-115788400	Weak transcription	Right Atrium	heart
10	chr5:115780200-115787400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:115780600-115789400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:115781400-115789600	Weak transcription	Primary B cells from cord blood	blood
13	chr5:115782000-115789600	Weak transcription	Fetal Brain Male	brain
14	chr5:115782200-115798200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:115782400-115786600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr5:115782600-115787200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:115782600-115788600	Weak transcription	Psoas Muscle	Psoas
18	chr5:115782600-115789800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr5:115782800-115789200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr5:115783000-115789800	Weak transcription	Fetal Thymus	thymus
21	chr5:115783200-115788200	Weak transcription	Brain Angular Gyrus	brain
22	chr5:115783400-115787200	Strong transcription	Fetal Intestine Large	intestine
23	chr5:115783400-115788600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr5:115783400-115789800	Weak transcription	Thymus	Thymus
25	chr5:115783400-115790200	Weak transcription	Brain Germinal Matrix	brain
26	chr5:115783400-115790200	Weak transcription	Right Ventricle	heart
27	chr5:115783600-115787800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr5:115783600-115788600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:115783600-115788600	Weak transcription	Fetal Kidney	kidney
30	chr5:115783600-115788600	Weak transcription	Lung	lung
31	chr5:115783600-115788800	Weak transcription	Brain Anterior Caudate	brain
32	chr5:115783600-115789200	Weak transcription	Colon Smooth Muscle	Colon
33	chr5:115783600-115789600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr5:115783600-115789600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr5:115783600-115789800	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr5:115783600-115789800	Weak transcription	Fetal Lung	lung
37	chr5:115783600-115790000	Weak transcription	Aorta	Aorta
38	chr5:115783600-115790000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr5:115783600-115790200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr5:115783600-115790400	Enhancers	HepG2	liver
41	chr5:115783600-115802200	Weak transcription	Colonic Mucosa	Colon
42	chr5:115783600-115802200	Weak transcription	Pancreas	Pancrea
43	chr5:115783600-115803400	Weak transcription	Esophagus	oesophagus
44	chr5:115783600-115813000	Weak transcription	Spleen	Spleen
45	chr5:115783600-115813200	Weak transcription	Gastric	stomach
46	chr5:115783600-115829600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr5:115783800-115787000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr5:115783800-115789600	Weak transcription	Stomach Smooth Muscle	stomach
49	chr5:115783800-115789800	Weak transcription	Adipose Nuclei	Adipose
50	chr5:115783800-115789800	Weak transcription	Ovary	ovary

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