Variant report

Variant	rs2288475
Chromosome Location	chr5:115793181-115793182
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10077506	1.00[GIH][hapmap]
rs10077720	1.00[GIH][hapmap]
rs2303752	1.00[GIH][hapmap]
rs3733724	0.82[ASN][1000 genomes]
rs4515324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9885352	1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115774600-115811000	Weak transcription	Small Intestine	intestine
2	chr5:115782200-115798200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:115783600-115802200	Weak transcription	Colonic Mucosa	Colon
4	chr5:115783600-115802200	Weak transcription	Pancreas	Pancrea
5	chr5:115783600-115803400	Weak transcription	Esophagus	oesophagus
6	chr5:115783600-115813000	Weak transcription	Spleen	Spleen
7	chr5:115783600-115813200	Weak transcription	Gastric	stomach
8	chr5:115783600-115829600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:115783800-115803200	Weak transcription	Liver	Liver
10	chr5:115784200-115796800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:115784200-115800000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:115785200-115800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:115788000-115813200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:115788600-115793800	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr5:115789000-115793800	Strong transcription	H9 Cell Line	embryonic stem cell
16	chr5:115789000-115795600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr5:115789000-115797400	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr5:115789000-115800200	Weak transcription	Psoas Muscle	Psoas
19	chr5:115789200-115796000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:115789400-115795200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr5:115789600-115795400	Strong transcription	H1 Cell Line	embryonic stem cell
22	chr5:115789600-115812600	Strong transcription	Fetal Intestine Large	intestine
23	chr5:115789800-115803200	Weak transcription	Lung	lung
24	chr5:115790000-115796800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:115790000-115800200	Weak transcription	Fetal Intestine Small	intestine
26	chr5:115790200-115795600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr5:115790400-115803200	Weak transcription	Aorta	Aorta
28	chr5:115790400-115812400	Weak transcription	HepG2	liver
29	chr5:115790600-115795800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr5:115790600-115800000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr5:115790800-115798600	Weak transcription	Brain Angular Gyrus	brain
32	chr5:115790800-115800000	Weak transcription	Adipose Nuclei	Adipose
33	chr5:115790800-115800200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr5:115790800-115802800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr5:115791000-115795200	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr5:115791000-115795400	Strong transcription	Fetal Muscle Leg	muscle
37	chr5:115791000-115795400	Strong transcription	Placenta	Placenta
38	chr5:115791000-115797800	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr5:115791000-115800000	Weak transcription	Primary B cells from cord blood	blood
40	chr5:115791000-115800200	Weak transcription	Fetal Brain Female	brain
41	chr5:115791000-115800200	Weak transcription	Left Ventricle	heart
42	chr5:115791000-115801600	Weak transcription	Fetal Thymus	thymus
43	chr5:115791000-115802200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:115791000-115802200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr5:115791000-115802800	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr5:115791000-115804000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr5:115791000-115812400	Weak transcription	Fetal Brain Male	brain
48	chr5:115791000-115812600	Weak transcription	Ovary	ovary
49	chr5:115791200-115793800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr5:115791200-115797800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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