Variant report

Variant	rs6861198
Chromosome Location	chr5:115775168-115775169
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115774637..115776948-chr5:115779132..115781411,2	K562	blood:

Variant related genes	Relation type
ENSG00000256121	Chromatin interaction

rs_ID	r²[population]
rs10077506	0.82[YRI][hapmap]
rs10077720	0.82[YRI][hapmap]
rs11950135	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs154601	0.88[CHB][hapmap]
rs154603	0.88[CHB][hapmap]
rs17139825	0.82[YRI][hapmap]
rs17431689	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[ASN][1000 genomes]
rs17509874	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7721205	0.89[AMR][1000 genomes]

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115723000-115776000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr5:115748600-115783000	Weak transcription	Thymus	Thymus
4	chr5:115749400-115782000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr5:115750200-115779400	Weak transcription	Fetal Intestine Small	intestine
6	chr5:115752800-115779400	Weak transcription	Fetal Intestine Large	intestine
7	chr5:115757200-115782000	Weak transcription	Gastric	stomach
8	chr5:115757400-115775400	Weak transcription	Adipose Nuclei	Adipose
9	chr5:115759800-115776400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr5:115760000-115781400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr5:115768400-115777000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:115768400-115777800	Weak transcription	Ovary	ovary
13	chr5:115768400-115781800	Weak transcription	Fetal Lung	lung
14	chr5:115768800-115780600	Weak transcription	Primary B cells from cord blood	blood
15	chr5:115769800-115777800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:115772000-115781200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr5:115772000-115781800	Weak transcription	Spleen	Spleen
18	chr5:115772200-115779000	Enhancers	Brain Angular Gyrus	brain
19	chr5:115772200-115781400	Enhancers	Brain Hippocampus Middle	brain
20	chr5:115772400-115777000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr5:115772400-115781400	Enhancers	Brain Substantia Nigra	brain
22	chr5:115772600-115775200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr5:115772600-115781200	Enhancers	Brain Cingulate Gyrus	brain
24	chr5:115772800-115776000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr5:115773200-115775200	Weak transcription	Right Atrium	heart
26	chr5:115773200-115780600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr5:115773200-115781000	Weak transcription	Primary T cells from cord blood	blood
28	chr5:115773200-115781200	Enhancers	Brain Anterior Caudate	brain
29	chr5:115773400-115775200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr5:115773400-115776200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr5:115773400-115777400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr5:115773600-115781600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr5:115773800-115775400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
34	chr5:115773800-115776800	Weak transcription	HepG2	liver
35	chr5:115773800-115777200	Weak transcription	Liver	Liver
36	chr5:115773800-115779600	Weak transcription	Fetal Kidney	kidney
37	chr5:115774000-115777400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:115774000-115779000	Enhancers	Fetal Muscle Leg	muscle
39	chr5:115774000-115780400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr5:115774400-115777800	Weak transcription	Right Ventricle	heart
41	chr5:115774400-115778200	Enhancers	Psoas Muscle	Psoas
42	chr5:115774400-115778400	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr5:115774400-115779000	Enhancers	Fetal Heart	heart
44	chr5:115774400-115779400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr5:115774600-115775200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr5:115774600-115778400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr5:115774600-115780200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr5:115774600-115780200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr5:115774600-115811000	Weak transcription	Small Intestine	intestine
50	chr5:115774800-115775600	Enhancers	Stomach Smooth Muscle	stomach

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