Variant report

Variant	rs2288011
Chromosome Location	chr16:81726863-81726864
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PLCG2-3	chr16:81726792-81727092	NONHSAT143953

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1017238	1.00[CEU][hapmap]
rs16955751	0.82[CEU][hapmap]
rs2012502	0.92[JPT][hapmap]
rs28375552	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28437192	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4888164	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
2	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
3	nsv907011	chr16:81639190-81757252	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81688400-81736800	Weak transcription	NHDF-Ad	bronchial
2	chr16:81713200-81727200	Weak transcription	NHLF	lung
3	chr16:81713200-81740600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr16:81713200-81744400	Weak transcription	Fetal Kidney	kidney
5	chr16:81721600-81727000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr16:81721800-81748400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr16:81722000-81738400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr16:81724000-81743400	Strong transcription	HepG2	liver
9	chr16:81724400-81745800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr16:81724600-81727200	Strong transcription	A549	lung
11	chr16:81724600-81727200	Strong transcription	Hela-S3	cervix
12	chr16:81724600-81727600	Strong transcription	Spleen	Spleen
13	chr16:81724600-81733000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr16:81724600-81734000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr16:81724600-81743400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr16:81724600-81746000	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr16:81724800-81727800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr16:81724800-81727800	Strong transcription	Fetal Thymus	thymus
19	chr16:81724800-81728200	Genic enhancers	Stomach Mucosa	stomach
20	chr16:81724800-81728400	Genic enhancers	Lung	lung
21	chr16:81724800-81732000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr16:81724800-81736400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr16:81724800-81740600	Strong transcription	Gastric	stomach
24	chr16:81724800-81741400	Strong transcription	Liver	Liver
25	chr16:81724800-81743200	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr16:81724800-81743400	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr16:81724800-81743400	Strong transcription	Primary B cells from peripheral blood	blood
28	chr16:81724800-81743400	Strong transcription	Dnd41	blood
29	chr16:81724800-81744400	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr16:81724800-81744600	Strong transcription	Primary T cells from cord blood	blood
31	chr16:81725000-81727400	Genic enhancers	Placenta Amnion	Placenta Amnion
32	chr16:81725000-81727800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr16:81725000-81728200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr16:81725000-81728800	Strong transcription	Primary hematopoietic stem cells	blood
35	chr16:81725000-81728800	Strong transcription	Fetal Intestine Large	intestine
36	chr16:81725000-81731600	Genic enhancers	Adipose Nuclei	Adipose
37	chr16:81725000-81733200	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr16:81725000-81744400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr16:81725000-81744600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr16:81725000-81746000	Strong transcription	Thymus	Thymus
41	chr16:81725200-81727000	Genic enhancers	HUVEC	blood vessel
42	chr16:81725200-81727600	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr16:81725200-81727800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr16:81725200-81727800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr16:81725200-81727800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr16:81725200-81727800	Strong transcription	Left Ventricle	heart
47	chr16:81725200-81728000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr16:81725200-81728000	Strong transcription	Aorta	Aorta
49	chr16:81725200-81728400	Strong transcription	Fetal Intestine Small	intestine
50	chr16:81725200-81728800	Strong transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links