Variant report

Variant	rs4888164
Chromosome Location	chr16:81726108-81726109
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2288011	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28375552	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28437192	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
2	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
3	nsv907011	chr16:81639190-81757252	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81688400-81736800	Weak transcription	NHDF-Ad	bronchial
2	chr16:81713200-81726200	Weak transcription	Small Intestine	intestine
3	chr16:81713200-81727200	Weak transcription	NHLF	lung
4	chr16:81713200-81740600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr16:81713200-81744400	Weak transcription	Fetal Kidney	kidney
6	chr16:81713400-81726600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr16:81714800-81726400	Weak transcription	Brain Substantia Nigra	brain
8	chr16:81715200-81726800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr16:81715400-81726200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr16:81715400-81726400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr16:81721600-81727000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr16:81721800-81726400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr16:81721800-81748400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr16:81722000-81726400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr16:81722000-81726800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr16:81722000-81738400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr16:81722200-81726800	Weak transcription	GM12878-XiMat	blood
18	chr16:81724000-81743400	Strong transcription	HepG2	liver
19	chr16:81724200-81726200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr16:81724400-81745800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr16:81724600-81727200	Strong transcription	A549	lung
22	chr16:81724600-81727200	Strong transcription	Hela-S3	cervix
23	chr16:81724600-81727600	Strong transcription	Spleen	Spleen
24	chr16:81724600-81733000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr16:81724600-81734000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr16:81724600-81743400	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr16:81724600-81746000	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr16:81724800-81726200	Strong transcription	HMEC	breast
29	chr16:81724800-81726400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr16:81724800-81726400	Strong transcription	Fetal Lung	lung
31	chr16:81724800-81726400	Strong transcription	Placenta	Placenta
32	chr16:81724800-81726800	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr16:81724800-81726800	Genic enhancers	Stomach Smooth Muscle	stomach
34	chr16:81724800-81727800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr16:81724800-81727800	Strong transcription	Fetal Thymus	thymus
36	chr16:81724800-81728200	Genic enhancers	Stomach Mucosa	stomach
37	chr16:81724800-81728400	Genic enhancers	Lung	lung
38	chr16:81724800-81732000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr16:81724800-81736400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr16:81724800-81740600	Strong transcription	Gastric	stomach
41	chr16:81724800-81741400	Strong transcription	Liver	Liver
42	chr16:81724800-81743200	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr16:81724800-81743400	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr16:81724800-81743400	Strong transcription	Primary B cells from peripheral blood	blood
45	chr16:81724800-81743400	Strong transcription	Dnd41	blood
46	chr16:81724800-81744400	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr16:81724800-81744600	Strong transcription	Primary T cells from cord blood	blood
48	chr16:81725000-81726400	Strong transcription	NHEK	skin
49	chr16:81725000-81727400	Genic enhancers	Placenta Amnion	Placenta Amnion
50	chr16:81725000-81727800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links